Wall clock time and date at job start Sun Mar 29 2020 22:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47578 * 2 1 4 4 C 1.36935 * 120.00011 * 92.43052 * 3 2 1 5 5 H 1.07998 * 119.99976 * 33.86245 * 4 3 2 6 6 C 1.38808 * 119.99909 * 213.58737 * 4 3 2 7 7 N 1.31626 * 119.99996 * 23.44985 * 6 4 3 8 8 Si 1.86798 * 120.00211 * 203.45029 * 6 4 3 9 9 H 1.48500 * 109.46967 * 89.99984 * 8 6 4 10 10 H 1.48503 * 109.47305 * 210.00338 * 8 6 4 11 11 H 1.48500 * 109.47083 * 329.99992 * 8 6 4 12 12 C 1.46497 * 119.99775 * 272.43295 * 3 2 1 13 13 C 1.50700 * 109.47394 * 269.99730 * 12 3 2 14 14 C 1.34663 * 125.99217 * 94.71621 * 13 12 3 15 15 N 1.36879 * 106.82131 * 179.85151 * 14 13 12 16 16 C 1.46494 * 126.40148 * 180.19099 * 15 14 13 17 17 C 1.52999 * 117.49970 * 188.90874 * 16 15 14 18 18 C 1.52995 * 117.50038 * 120.28638 * 16 15 14 19 19 C 1.35047 * 107.20220 * 0.41178 * 15 14 13 20 20 N 1.30496 * 108.69872 * 359.74140 * 19 15 14 21 21 H 1.08999 * 109.47525 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47306 * 300.00515 * 1 2 3 23 23 H 1.09010 * 109.46797 * 60.00232 * 1 2 3 24 24 H 1.09000 * 109.47306 * 239.99485 * 2 1 3 25 25 H 1.09001 * 109.47104 * 120.00327 * 2 1 3 26 26 H 0.96999 * 120.00029 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47317 * 30.00282 * 12 3 2 28 28 H 1.09008 * 109.47014 * 149.99503 * 12 3 2 29 29 H 1.08006 * 126.58912 * 359.96603 * 14 13 12 30 30 H 1.09004 * 115.55054 * 334.61683 * 16 15 14 31 31 H 1.08995 * 117.50067 * 0.02562 * 17 16 15 32 32 H 1.08999 * 117.49837 * 145.02128 * 17 16 15 33 33 H 1.09005 * 117.50421 * 214.98200 * 18 16 15 34 34 H 1.09003 * 117.49992 * 359.97410 * 18 16 15 35 35 H 1.07994 * 125.65072 * 179.76460 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2941 2.0099 1.1848 5 1 2.6849 1.4447 2.0179 6 6 2.0765 3.3748 1.3133 7 7 1.2122 3.9804 0.5266 8 14 3.0103 4.3523 2.6025 9 1 4.2766 4.8609 2.0169 10 1 2.1789 5.4968 3.0542 11 1 3.3177 3.4760 3.7614 12 6 2.2118 2.0897 -1.2676 13 6 3.6164 1.8594 -1.7626 14 6 4.0019 0.9104 -2.6367 15 7 5.3517 1.0566 -2.8106 16 6 6.2094 0.2458 -3.6783 17 6 7.7218 0.4468 -3.5639 18 6 6.9716 0.9671 -4.7916 19 6 5.7459 2.0849 -2.0290 20 7 4.7029 2.5602 -1.4052 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.0599 4.9341 0.6166 27 1 1.5010 1.7162 -2.0047 28 1 2.0505 3.1570 -1.1156 29 1 3.3675 0.1762 -3.1111 30 1 5.8495 -0.7620 -3.8860 31 1 8.0787 1.1820 -2.8428 32 1 8.3573 -0.4288 -3.6962 33 1 7.1136 0.4338 -5.7317 34 1 6.8346 2.0450 -4.8788 35 1 6.7569 2.4532 -1.9358 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658449263.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:45 Heat of formation + Delta-G solvation = 96.482970 kcal Electronic energy + Delta-G solvation = -16643.517691 eV Core-core repulsion = 14064.821867 eV Total energy + Delta-G solvation = -2578.695823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.82825 -38.30571 -37.45373 -33.70515 -32.85602 -31.58634 -29.94346 -27.18920 -25.26763 -24.33609 -23.37061 -22.25348 -21.44031 -20.41692 -18.68671 -18.14898 -16.70511 -16.42131 -15.88013 -15.69158 -15.25508 -14.86321 -14.75303 -14.62764 -14.02214 -13.73563 -13.11317 -13.05056 -12.83469 -12.47754 -12.46187 -12.33460 -12.11396 -11.95286 -11.80828 -11.58804 -11.47257 -10.60551 -10.43979 -10.06002 -9.12015 -8.55837 -7.75959 -5.30238 1.21349 1.42928 1.51833 1.53882 1.93302 2.37436 2.59836 2.81993 3.35962 3.54662 3.84634 3.87003 3.92363 3.96734 4.12755 4.47977 4.59463 4.62472 4.70137 4.80050 4.89658 4.93253 4.99707 5.07381 5.13233 5.18334 5.33094 5.49242 5.60062 5.69682 5.86040 6.06681 6.50834 6.55899 7.24050 7.48264 7.97038 8.44864 9.21322 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.007727 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.309047 B = 3623.000038 C = 4356.788822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 N -0.589 5.589 4 C -0.251 4.251 5 H 0.045 0.955 6 C -0.028 4.028 7 N -0.913 5.913 8 Si 0.947 3.053 9 H -0.295 1.295 10 H -0.291 1.291 11 H -0.272 1.272 12 C 0.216 3.784 13 C -0.014 4.014 14 C -0.058 4.058 15 N -0.430 5.430 16 C 0.033 3.967 17 C -0.162 4.162 18 C -0.169 4.169 19 C 0.161 3.839 20 N -0.528 5.528 21 H 0.069 0.931 22 H 0.025 0.975 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.037 0.963 26 H 0.248 0.752 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.191 0.809 30 H 0.156 0.844 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.972 -10.000 -11.893 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 N -0.310 5.310 4 C -0.382 4.382 5 H 0.062 0.938 6 C -0.225 4.225 7 N -0.558 5.558 8 Si 0.776 3.224 9 H -0.222 1.222 10 H -0.217 1.217 11 H -0.197 1.197 12 C 0.089 3.911 13 C -0.144 4.144 14 C -0.190 4.190 15 N -0.113 5.113 16 C -0.071 4.071 17 C -0.200 4.200 18 C -0.207 4.207 19 C -0.121 4.121 20 N -0.247 5.247 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.173 0.827 31 H 0.117 0.883 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 10.972 -9.296 -11.403 18.353 hybrid contribution 0.262 0.334 0.346 0.548 sum 11.234 -8.962 -11.057 18.132 Atomic orbital electron populations 1.22129 0.98455 1.00220 1.00114 1.20968 0.92791 0.85765 0.98984 1.43955 1.74507 1.11048 1.01501 1.19043 1.35263 0.91890 0.91964 0.93778 1.25486 0.97840 0.99044 1.00097 1.70067 1.33653 1.09432 1.42678 0.85591 0.78602 0.78635 0.79550 1.22217 1.21712 1.19682 1.19085 0.86463 1.00058 0.85472 1.22065 0.97168 0.96367 0.98834 1.22583 0.84601 1.05168 1.06689 1.44984 1.07001 1.25831 1.33479 1.22352 0.90604 0.96546 0.97552 1.23499 0.91065 1.05033 1.00366 1.23524 1.01447 1.01084 0.94616 1.25249 1.00483 0.91312 0.95020 1.70201 0.99558 1.29849 1.25095 0.91221 0.95567 0.94428 0.92749 0.94429 0.94280 0.93616 0.91260 0.79248 0.82686 0.88281 0.84645 0.84907 0.89375 0.76346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 10.24 71.98 0.74 -5.24 16 2 C 0.14 6.08 6.39 86.38 0.55 6.63 16 3 N -0.59 -31.25 2.44 -706.35 -1.72 -32.98 16 4 C -0.25 -14.89 9.47 84.03 0.80 -14.10 16 5 H 0.04 2.66 7.93 -2.91 -0.02 2.64 16 6 C -0.03 -1.66 4.94 84.86 0.42 -1.24 16 7 N -0.91 -56.88 11.32 21.65 0.25 -56.63 16 8 Si 0.95 49.31 29.61 68.60 2.03 51.34 16 9 H -0.29 -15.75 7.11 99.48 0.71 -15.04 16 10 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 11 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 12 C 0.22 11.16 5.84 85.63 0.50 11.66 16 13 C -0.01 -0.63 6.67 41.39 0.28 -0.35 16 14 C -0.06 -2.05 11.49 83.09 0.95 -1.09 16 15 N -0.43 -12.91 3.08 -506.57 -1.56 -14.48 16 16 C 0.03 0.61 6.89 44.99 0.31 0.92 16 17 C -0.16 -2.14 9.98 30.59 0.31 -1.84 16 18 C -0.17 -2.34 10.39 30.59 0.32 -2.02 16 19 C 0.16 5.73 11.89 180.26 2.14 7.87 16 20 N -0.53 -25.20 11.25 -188.32 -2.12 -27.31 16 21 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 24 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16 25 H 0.04 1.62 8.02 -2.39 -0.02 1.61 16 26 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 28 H 0.07 4.21 5.31 -2.38 -0.01 4.20 16 29 H 0.19 5.46 8.06 -2.91 -0.02 5.43 16 30 H 0.16 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.10 1.44 6.84 -2.39 -0.02 1.42 16 32 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.22 5.96 7.03 -2.91 -0.02 5.94 16 Total: -1.00 -75.68 297.88 5.24 -70.43 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.06 Total: 8.42 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 7.31 Total: 1.20 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -5.16 Total: -131.40 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.03 Total: 51.34 kcal Total: -75.68 5.24 -70.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658449263.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.917 kcal (2) G-P(sol) polarization free energy of solvation -75.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds