Wall clock time and date at job start Sun Mar 29 2020 22:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47315 * 2 1 4 4 C 1.46901 * 110.99671 * 288.04910 * 3 2 1 5 5 C 1.50698 * 109.46616 * 160.35840 * 4 3 2 6 6 H 1.08000 * 120.00356 * 4.66054 * 5 4 3 7 7 C 1.37883 * 119.99789 * 184.65922 * 5 4 3 8 8 N 1.31508 * 119.99924 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99767 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47219 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46875 * 120.00294 * 9 7 5 12 12 H 1.48497 * 109.47120 * 240.00152 * 9 7 5 13 13 C 1.46903 * 110.99794 * 164.10235 * 3 2 1 14 14 C 1.50702 * 109.47015 * 293.95072 * 13 3 2 15 15 C 1.38604 * 120.07847 * 95.00168 * 14 13 3 16 16 C 1.38886 * 117.97072 * 180.02562 * 15 14 13 17 17 C 1.38602 * 117.96689 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.07594 * 179.97438 * 17 16 15 19 19 N 1.31931 * 119.85184 * 359.97438 * 17 16 15 20 20 N 1.28349 * 122.17926 * 0.02562 * 19 17 16 21 21 H 1.08996 * 109.47297 * 299.45823 * 1 2 3 22 22 H 1.09000 * 109.46844 * 59.45288 * 1 2 3 23 23 H 1.08999 * 109.47961 * 179.45164 * 1 2 3 24 24 H 1.09002 * 109.47162 * 239.99442 * 2 1 3 25 25 H 1.09001 * 109.46763 * 120.00052 * 2 1 3 26 26 H 1.08995 * 109.47161 * 280.36078 * 4 3 2 27 27 H 1.08998 * 109.47045 * 40.36496 * 4 3 2 28 28 H 0.97008 * 119.99718 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46823 * 173.95399 * 13 3 2 30 30 H 1.08992 * 109.47629 * 53.95064 * 13 3 2 31 31 H 1.07997 * 121.01510 * 0.27314 * 15 14 13 32 32 H 1.08002 * 121.01495 * 179.97438 * 16 15 14 33 33 H 1.09006 * 109.46945 * 90.00301 * 18 17 16 34 34 H 1.08997 * 109.47539 * 209.99636 * 18 17 16 35 35 H 1.08998 * 109.47173 * 330.00242 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7945 2.0229 -1.3040 5 6 1.8460 3.5207 -1.1459 6 1 2.1020 3.9544 -0.1905 7 6 1.5662 4.3374 -2.2210 8 7 1.2540 3.8092 -3.3842 9 14 1.6307 6.1940 -2.0253 10 1 2.0043 6.5318 -0.6283 11 1 2.6418 6.7552 -2.9571 12 1 0.2979 6.7710 -2.3350 13 6 3.4387 1.4416 0.3757 14 6 3.5965 1.0055 1.8096 15 6 3.9127 -0.3114 2.1044 16 6 4.0471 -0.6655 3.4406 17 6 3.8562 0.3197 4.3966 18 6 3.9898 -0.0123 5.8605 19 7 3.5571 1.5489 4.0221 20 7 3.4330 1.8762 2.7873 21 1 -0.3634 0.5054 0.8948 22 1 -0.3633 0.5223 -0.8850 23 1 -0.3635 -1.0276 -0.0098 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 2.5681 1.7044 -2.0026 27 1 0.8166 1.7314 -1.6870 28 1 1.0576 4.3838 -4.1407 29 1 3.8036 2.4626 0.2642 30 1 4.0126 0.7780 -0.2711 31 1 4.0543 -1.0389 1.3190 32 1 4.2921 -1.6779 3.7261 33 1 5.0226 0.1393 6.1746 34 1 3.3345 0.6365 6.4416 35 1 3.7093 -1.0528 6.0241 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658721412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:44 Heat of formation + Delta-G solvation = 54.258429 kcal Electronic energy + Delta-G solvation = -16373.832826 eV Core-core repulsion = 13793.306009 eV Total energy + Delta-G solvation = -2580.526817 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88948 -37.15092 -33.89377 -33.15297 -32.47032 -30.39897 -28.67969 -26.90420 -25.11416 -23.76890 -22.58380 -22.10121 -19.85333 -17.30752 -16.43001 -16.08588 -15.39442 -15.27995 -14.63675 -14.22036 -13.87494 -13.61974 -13.18047 -13.16145 -12.76659 -12.47424 -12.19995 -11.78366 -11.45170 -11.29023 -10.99849 -10.84251 -10.62513 -10.53705 -10.26772 -10.04389 -9.69776 -9.39671 -9.35432 -9.11937 -8.38304 -7.31753 -5.98506 -3.98762 0.96243 1.08109 3.36476 3.43993 3.52019 3.69592 4.13924 4.48464 4.53548 4.66495 4.72878 4.99508 5.05331 5.22822 5.37858 5.38932 5.40419 5.59895 5.70157 5.79394 5.86609 5.95928 6.02950 6.21356 6.26864 6.36153 6.49561 6.55980 6.78688 7.18926 7.29086 7.86505 8.08697 8.15816 8.54065 9.02004 9.10744 9.65689 11.12150 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.006304 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.445405 B = 4440.532495 C = 5033.698240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.526 5.526 4 C 0.192 3.808 5 C -0.503 4.503 6 H 0.067 0.933 7 C 0.055 3.945 8 N -0.902 5.902 9 Si 0.896 3.104 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.111 3.889 14 C 0.089 3.911 15 C -0.115 4.115 16 C -0.124 4.124 17 C 0.050 3.950 18 C -0.096 4.096 19 N -0.245 5.245 20 N -0.214 5.214 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.025 0.975 25 H 0.053 0.947 26 H -0.009 1.009 27 H 0.040 0.960 28 H 0.260 0.740 29 H 0.105 0.895 30 H 0.042 0.958 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.438 -11.903 11.916 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.251 5.251 4 C 0.068 3.932 5 C -0.541 4.541 6 H 0.086 0.914 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.724 3.276 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.018 4.018 14 C -0.056 4.056 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.095 4.095 18 C -0.155 4.155 19 N -0.088 5.088 20 N -0.056 5.056 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.009 0.991 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.768 -10.008 12.524 16.725 hybrid contribution 0.742 -1.069 -1.143 1.732 sum 5.510 -11.077 11.381 16.810 Atomic orbital electron populations 1.21728 0.95273 0.99949 1.03083 1.22091 0.96416 0.90964 0.98776 1.62147 1.13768 1.14204 1.34991 1.19830 0.96681 0.94473 0.82235 1.21261 1.45794 0.90488 0.96607 0.91443 1.24972 0.95447 0.99000 0.95174 1.69966 1.47999 1.35141 1.01082 0.86461 0.77501 0.85341 0.78317 1.19427 1.21202 1.21094 1.20855 0.91585 1.03151 0.86251 1.23098 0.93019 0.90723 0.98741 1.22366 0.97416 0.97316 0.97366 1.22181 0.99079 1.00926 0.93137 1.22852 0.96638 0.91758 0.98234 1.20614 1.03301 1.02243 0.89308 1.73058 1.08893 1.16401 1.10432 1.73074 1.08142 1.30086 0.94302 0.92507 0.91739 0.93628 0.95703 0.92848 0.99135 0.94167 0.93069 0.87636 0.94030 0.83731 0.83831 0.90280 0.90137 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.98 37.15 0.37 -2.11 16 2 C 0.05 0.83 5.53 -3.83 -0.02 0.81 16 3 N -0.53 -11.38 4.37 -237.52 -1.04 -12.42 16 4 C 0.19 4.94 4.59 -4.98 -0.02 4.92 16 5 C -0.50 -14.26 8.61 -34.44 -0.30 -14.55 16 6 H 0.07 1.95 7.66 -52.49 -0.40 1.55 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.11 2.15 5.14 -4.97 -0.03 2.12 16 14 C 0.09 1.56 5.77 -82.41 -0.48 1.08 16 15 C -0.11 -1.53 8.17 -39.21 -0.32 -1.85 16 16 C -0.12 -1.42 9.88 -39.21 -0.39 -1.81 16 17 C 0.05 0.66 6.86 -82.42 -0.57 0.09 16 18 C -0.10 -0.84 10.20 36.01 0.37 -0.48 16 19 N -0.25 -4.29 11.43 33.59 0.38 -3.90 16 20 N -0.21 -4.21 11.43 33.59 0.38 -3.83 16 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.06 1.24 6.52 -51.93 -0.34 0.91 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.02 0.43 8.05 -51.93 -0.42 0.02 16 25 H 0.05 0.86 5.58 -51.93 -0.29 0.57 16 26 H -0.01 -0.24 8.00 -51.93 -0.42 -0.66 16 27 H 0.04 1.10 6.24 -51.93 -0.32 0.78 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.11 2.27 7.32 -51.93 -0.38 1.89 16 30 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 31 H 0.14 1.54 8.02 -52.49 -0.42 1.12 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 LS Contribution 294.01 15.07 4.43 4.43 Total: -1.00 -32.25 294.01 -6.67 -38.92 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -5.07 Total: -3.94 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.47 Total: -10.31 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.47 Total: -46.19 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.25 -6.67 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658721412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.181 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds