Wall clock time and date at job start Sun Mar 29 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47315 * 2 1 4 4 C 1.46901 * 110.99671 * 288.04910 * 3 2 1 5 5 C 1.50698 * 109.46616 * 160.35840 * 4 3 2 6 6 H 1.08000 * 120.00356 * 4.66054 * 5 4 3 7 7 C 1.37883 * 119.99789 * 184.65922 * 5 4 3 8 8 N 1.31508 * 119.99924 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99767 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47219 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46875 * 120.00294 * 9 7 5 12 12 H 1.48497 * 109.47120 * 240.00152 * 9 7 5 13 13 C 1.46903 * 110.99794 * 164.10235 * 3 2 1 14 14 C 1.50702 * 109.47015 * 293.95072 * 13 3 2 15 15 C 1.38604 * 120.07847 * 95.00168 * 14 13 3 16 16 C 1.38886 * 117.97072 * 180.02562 * 15 14 13 17 17 C 1.38602 * 117.96689 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.07594 * 179.97438 * 17 16 15 19 19 N 1.31931 * 119.85184 * 359.97438 * 17 16 15 20 20 N 1.28349 * 122.17926 * 0.02562 * 19 17 16 21 21 H 1.08996 * 109.47297 * 299.45823 * 1 2 3 22 22 H 1.09000 * 109.46844 * 59.45288 * 1 2 3 23 23 H 1.08999 * 109.47961 * 179.45164 * 1 2 3 24 24 H 1.09002 * 109.47162 * 239.99442 * 2 1 3 25 25 H 1.09001 * 109.46763 * 120.00052 * 2 1 3 26 26 H 1.08995 * 109.47161 * 280.36078 * 4 3 2 27 27 H 1.08998 * 109.47045 * 40.36496 * 4 3 2 28 28 H 0.97008 * 119.99718 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46823 * 173.95399 * 13 3 2 30 30 H 1.08992 * 109.47629 * 53.95064 * 13 3 2 31 31 H 1.07997 * 121.01510 * 0.27314 * 15 14 13 32 32 H 1.08002 * 121.01495 * 179.97438 * 16 15 14 33 33 H 1.09006 * 109.46945 * 90.00301 * 18 17 16 34 34 H 1.08997 * 109.47539 * 209.99636 * 18 17 16 35 35 H 1.08998 * 109.47173 * 330.00242 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7945 2.0229 -1.3040 5 6 1.8460 3.5207 -1.1459 6 1 2.1020 3.9544 -0.1905 7 6 1.5662 4.3374 -2.2210 8 7 1.2540 3.8092 -3.3842 9 14 1.6307 6.1940 -2.0253 10 1 2.0043 6.5318 -0.6283 11 1 2.6418 6.7552 -2.9571 12 1 0.2979 6.7710 -2.3350 13 6 3.4387 1.4416 0.3757 14 6 3.5965 1.0055 1.8096 15 6 3.9127 -0.3114 2.1044 16 6 4.0471 -0.6655 3.4406 17 6 3.8562 0.3197 4.3966 18 6 3.9898 -0.0123 5.8605 19 7 3.5571 1.5489 4.0221 20 7 3.4330 1.8762 2.7873 21 1 -0.3634 0.5054 0.8948 22 1 -0.3633 0.5223 -0.8850 23 1 -0.3635 -1.0276 -0.0098 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 2.5681 1.7044 -2.0026 27 1 0.8166 1.7314 -1.6870 28 1 1.0576 4.3838 -4.1407 29 1 3.8036 2.4626 0.2642 30 1 4.0126 0.7780 -0.2711 31 1 4.0543 -1.0389 1.3190 32 1 4.2921 -1.6779 3.7261 33 1 5.0226 0.1393 6.1746 34 1 3.3345 0.6365 6.4416 35 1 3.7093 -1.0528 6.0241 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658721412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:43 Heat of formation + Delta-G solvation = 31.411523 kcal Electronic energy + Delta-G solvation = -16374.823543 eV Core-core repulsion = 13793.306009 eV Total energy + Delta-G solvation = -2581.517533 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.03516 -38.75824 -35.12295 -34.69368 -34.09083 -31.84327 -30.05928 -28.48371 -26.64010 -24.86494 -24.46050 -23.27028 -21.48979 -18.66083 -18.35106 -17.30300 -16.89253 -16.51424 -16.22810 -15.62468 -15.36613 -15.25198 -14.49048 -14.12269 -14.07135 -13.65889 -13.42881 -13.26984 -13.09935 -12.91341 -12.71515 -12.61666 -12.33695 -12.14576 -11.87560 -11.48923 -11.32011 -11.03835 -10.60390 -10.50553 -10.45230 -9.02950 -8.19222 -6.27332 -0.07390 -0.00664 1.38904 1.40251 1.54822 2.40840 2.54135 3.01553 3.12445 3.35995 3.58395 3.70640 3.80847 4.08440 4.15454 4.19388 4.33795 4.55789 4.63027 4.66273 4.73475 4.78993 4.85703 4.91906 4.99303 5.09969 5.20430 5.24672 5.30077 5.36252 5.45145 5.68657 6.09038 6.32665 6.61850 6.87666 7.41575 7.86804 8.91010 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.006304 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.445405 B = 4440.532495 C = 5033.698240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.046 3.954 3 N -0.543 5.543 4 C 0.209 3.791 5 C -0.519 4.519 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.277 1.277 13 C 0.117 3.883 14 C 0.070 3.930 15 C -0.113 4.113 16 C -0.104 4.104 17 C 0.050 3.950 18 C -0.094 4.094 19 N -0.288 5.288 20 N -0.270 5.270 21 H 0.044 0.956 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.033 0.967 25 H 0.081 0.919 26 H -0.029 1.029 27 H 0.019 0.981 28 H 0.264 0.736 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.177 0.823 32 H 0.198 0.802 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -14.195 13.525 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 N -0.268 5.268 4 C 0.084 3.916 5 C -0.558 4.558 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.200 1.200 12 H -0.202 1.202 13 C -0.013 4.013 14 C -0.076 4.076 15 C -0.142 4.142 16 C -0.133 4.133 17 C -0.096 4.096 18 C -0.153 4.153 19 N -0.129 5.129 20 N -0.110 5.110 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.099 0.901 26 H -0.011 1.011 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.194 0.806 32 H 0.215 0.785 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.507 -12.297 14.151 19.539 hybrid contribution 0.554 -0.470 -1.528 1.692 sum 6.061 -12.767 12.623 18.949 Atomic orbital electron populations 1.21704 0.95031 1.01782 1.01080 1.22195 0.96620 0.89008 1.00359 1.61991 1.15808 1.16707 1.32294 1.19425 0.94709 0.93529 0.83958 1.21484 1.45919 0.92296 0.96072 0.93006 1.25764 0.94950 1.03567 0.94815 1.70058 1.48586 1.36827 1.01744 0.85458 0.77939 0.79860 0.78126 1.19708 1.20027 1.20227 1.20688 0.90263 1.01704 0.88638 1.22812 0.95222 0.92683 0.96920 1.22651 0.96323 0.95766 0.99425 1.22749 0.96228 1.02707 0.91569 1.23649 0.94294 0.90781 1.00900 1.20790 1.04280 1.04122 0.86064 1.72950 1.11214 1.19235 1.09531 1.72916 1.10307 1.32213 0.95569 0.93633 0.94540 0.89824 0.94866 0.90123 1.01149 0.96291 0.92676 0.91329 0.92046 0.80586 0.78498 0.88565 0.90899 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.98 71.98 0.72 -4.02 16 2 C 0.05 1.61 5.53 86.30 0.48 2.08 16 3 N -0.54 -24.11 4.37 -905.38 -3.96 -28.07 16 4 C 0.21 11.25 4.59 85.56 0.39 11.64 16 5 C -0.52 -30.72 8.61 25.60 0.22 -30.50 16 6 H 0.05 3.16 7.66 -2.91 -0.02 3.14 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 9 Si 0.96 46.42 29.54 68.60 2.03 48.45 16 10 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C 0.12 4.62 5.14 85.56 0.44 5.06 16 14 C 0.07 2.43 5.77 42.63 0.25 2.68 16 15 C -0.11 -2.65 8.17 22.51 0.18 -2.46 16 16 C -0.10 -1.91 9.88 22.51 0.22 -1.68 16 17 C 0.05 1.17 6.86 42.63 0.29 1.46 16 18 C -0.09 -1.30 10.20 71.24 0.73 -0.57 16 19 N -0.29 -10.02 11.43 -47.63 -0.54 -10.56 16 20 N -0.27 -10.85 11.43 -47.63 -0.54 -11.39 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.04 1.43 6.52 -2.39 -0.02 1.42 16 23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.03 1.11 8.05 -2.39 -0.02 1.09 16 25 H 0.08 2.38 5.58 -2.39 -0.01 2.37 16 26 H -0.03 -1.64 8.00 -2.39 -0.02 -1.66 16 27 H 0.02 1.09 6.24 -2.39 -0.01 1.08 16 28 H 0.26 15.05 8.31 -92.70 -0.77 14.27 16 29 H 0.07 3.16 7.32 -2.39 -0.02 3.14 16 30 H 0.06 2.12 8.03 -2.39 -0.02 2.10 16 31 H 0.18 2.93 8.02 -2.91 -0.02 2.91 16 32 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 0.78 8.09 -2.39 -0.02 0.76 16 Total: -1.00 -74.65 294.01 2.71 -71.94 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.07 Total: 1.32 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 4.38 Total: -15.43 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.76 Total: -106.27 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -74.65 2.71 -71.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658721412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.347 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds