Wall clock time and date at job start Sun Mar 29 2020 22:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.53005 * 109.46924 * 120.00074 * 2 1 3 5 5 C 1.50707 * 109.46823 * 195.96063 * 4 2 1 6 6 H 1.07999 * 120.00195 * 5.72598 * 5 4 2 7 7 C 1.37875 * 119.99826 * 185.72960 * 5 4 2 8 8 N 1.31508 * 120.00035 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99980 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47257 * 90.00195 * 9 7 5 11 11 H 1.48503 * 109.47119 * 210.00219 * 9 7 5 12 12 H 1.48505 * 109.47301 * 329.99747 * 9 7 5 13 13 N 1.46900 * 109.46861 * 239.99511 * 2 1 3 14 14 C 1.47076 * 110.99850 * 43.98617 * 13 2 1 15 15 C 1.53395 * 109.67709 * 53.32052 * 14 13 2 16 16 N 1.46638 * 108.26917 * 49.82059 * 15 14 13 17 17 N 1.39384 * 128.42956 * 163.48459 * 16 15 14 18 18 C 1.31111 * 108.07792 * 180.20640 * 17 16 15 19 19 C 1.40127 * 108.27749 * 359.93662 * 18 17 16 20 20 C 1.34550 * 107.78871 * 359.96385 * 19 18 17 21 21 C 1.47367 * 110.99679 * 168.12392 * 13 2 1 22 22 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47167 * 300.00250 * 1 2 3 24 24 H 1.08995 * 109.47150 * 59.99982 * 1 2 3 25 25 H 1.08998 * 109.46886 * 315.95817 * 4 2 1 26 26 H 1.09003 * 109.47315 * 75.96076 * 4 2 1 27 27 H 0.97000 * 120.00400 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.48474 * 293.24095 * 14 13 2 29 29 H 1.09004 * 109.43087 * 173.36667 * 14 13 2 30 30 H 1.08991 * 109.70837 * 290.11861 * 15 14 13 31 31 H 1.09003 * 109.70897 * 169.52457 * 15 14 13 32 32 H 1.08006 * 125.86561 * 179.97438 * 18 17 16 33 33 H 1.07994 * 126.10729 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.75051 * 166.25879 * 21 13 2 35 35 H 1.08994 * 109.79170 * 45.55099 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.4954 -0.3920 1.4604 6 1 3.9815 0.3365 0.8285 7 6 4.2064 -1.0210 2.4603 8 7 5.4766 -0.7341 2.6443 9 14 3.3656 -2.2808 3.5537 10 1 3.5018 -3.6303 2.9492 11 1 4.0005 -2.2733 4.8961 12 1 1.9262 -1.9401 3.6850 13 7 2.0196 -0.6926 -1.1994 14 6 1.2638 -0.2800 -2.3917 15 6 1.2787 1.2494 -2.5090 16 7 2.6656 1.7071 -2.3771 17 7 3.2058 2.9449 -2.7218 18 6 4.4859 2.9230 -2.4390 19 6 4.7962 1.6661 -1.9030 20 6 3.6634 0.9405 -1.8742 21 6 3.4650 -0.4720 -1.3835 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 1.4646 -0.3970 2.1164 26 1 1.9261 -1.7976 1.1194 27 1 5.9768 -1.1764 3.3479 28 1 0.2340 -0.6271 -2.3075 29 1 1.7212 -0.7161 -3.2799 30 1 0.6710 1.6848 -1.7158 31 1 0.8839 1.5475 -3.4803 32 1 5.1817 3.7348 -2.5922 33 1 5.7704 1.3382 -1.5719 34 1 3.8542 -1.1755 -2.1195 35 1 3.9830 -0.6081 -0.4342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659562640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:44 Heat of formation + Delta-G solvation = 96.636901 kcal Electronic energy + Delta-G solvation = -17484.276850 eV Core-core repulsion = 14905.587701 eV Total energy + Delta-G solvation = -2578.689149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.22822 -38.11489 -33.80685 -32.20628 -31.87664 -29.94074 -28.46563 -27.43954 -24.42701 -23.59521 -22.02014 -20.71329 -20.04220 -17.96167 -16.96786 -16.32537 -15.55731 -15.48068 -14.44590 -14.35028 -13.79488 -13.66578 -12.94978 -12.73972 -12.64001 -12.12634 -11.95682 -11.86762 -11.65605 -11.50106 -11.13583 -10.95343 -10.82972 -10.30561 -10.24789 -9.93402 -9.48298 -9.07928 -8.71464 -8.53446 -8.01278 -7.90873 -6.09556 -4.06482 2.36122 2.84988 3.29527 3.33510 3.37566 3.41077 4.33295 4.41910 4.71699 5.02422 5.13214 5.22912 5.32072 5.43269 5.56779 5.62344 5.66719 5.87648 5.91168 6.05692 6.09841 6.24650 6.31973 6.49609 6.57647 6.68474 6.92305 7.11427 7.13996 7.23018 7.47721 7.53676 7.72861 7.76593 8.18760 8.45347 8.91110 9.51809 11.01529 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.009682 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.841746 B = 2891.360416 C = 3594.075015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.087 3.913 3 H 0.041 0.959 4 C -0.006 4.006 5 C -0.527 4.527 6 H 0.084 0.916 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.880 3.120 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.516 5.516 14 C 0.035 3.965 15 C 0.095 3.905 16 N -0.374 5.374 17 N -0.312 5.312 18 C 0.039 3.961 19 C -0.266 4.266 20 C 0.074 3.926 21 C 0.077 3.923 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.019 0.981 26 H 0.027 0.973 27 H 0.264 0.736 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.178 0.822 33 H 0.147 0.853 34 H 0.083 0.917 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.849 0.904 -8.912 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 H 0.059 0.941 4 C -0.043 4.043 5 C -0.564 4.564 6 H 0.102 0.898 7 C -0.131 4.131 8 N -0.533 5.533 9 Si 0.707 3.293 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.238 5.238 14 C -0.095 4.095 15 C -0.028 4.028 16 N -0.158 5.158 17 N -0.133 5.133 18 C -0.147 4.147 19 C -0.295 4.295 20 C -0.054 4.054 21 C -0.051 4.051 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.195 0.805 33 H 0.165 0.835 34 H 0.101 0.899 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.904 1.015 -9.204 12.174 hybrid contribution 0.501 -0.051 0.779 0.927 sum -7.404 0.965 -8.424 11.257 Atomic orbital electron populations 1.22157 0.96291 1.01957 1.00899 1.21723 0.92831 0.96397 0.91112 0.94125 1.19629 0.97108 0.96248 0.91344 1.21196 0.93520 1.24739 1.16920 0.89843 1.25014 0.94650 0.96558 0.96852 1.69908 1.07979 1.42805 1.32650 0.86776 0.80265 0.82212 0.80003 1.20178 1.21622 1.19181 1.62428 1.03060 1.56763 1.01538 1.22721 1.01361 0.90083 0.95339 1.22569 0.79285 0.97784 1.03157 1.48523 1.07928 1.09975 1.49411 1.77074 1.10388 1.01116 1.24690 1.23861 0.93056 0.98175 0.99597 1.21033 0.99629 0.95010 1.13832 1.22155 0.88881 0.97205 0.97140 1.22318 0.89812 0.86298 1.06693 0.92001 0.92376 0.93436 0.96311 0.95440 0.92633 0.88317 0.90361 0.89785 0.89737 0.80549 0.83496 0.89873 0.81105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.06 37.16 0.30 -2.07 16 2 C 0.09 1.66 1.58 -67.71 -0.11 1.56 16 3 H 0.04 0.88 6.38 -51.93 -0.33 0.55 16 4 C -0.01 -0.13 3.67 -27.88 -0.10 -0.23 16 5 C -0.53 -13.87 7.34 -34.44 -0.25 -14.12 16 6 H 0.08 2.37 6.16 -52.49 -0.32 2.04 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -26.13 13.96 55.43 0.77 -25.35 16 9 Si 0.88 21.00 27.36 -169.99 -4.65 16.35 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.19 6.71 56.52 0.38 -5.81 16 13 N -0.52 -9.13 4.83 -227.19 -1.10 -10.23 16 14 C 0.03 0.49 5.32 -3.52 -0.02 0.47 16 15 C 0.10 1.41 6.36 -3.76 -0.02 1.38 16 16 N -0.37 -6.86 3.84 -56.85 -0.22 -7.07 16 17 N -0.31 -5.92 12.64 30.73 0.39 -5.53 16 18 C 0.04 0.68 12.04 -17.15 -0.21 0.47 16 19 C -0.27 -5.02 10.77 -40.18 -0.43 -5.45 16 20 C 0.07 1.43 5.67 -82.20 -0.47 0.97 16 21 C 0.08 1.47 5.72 -4.65 -0.03 1.44 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.61 4.85 -51.93 -0.25 0.36 16 25 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 26 H 0.03 0.63 7.25 -51.93 -0.38 0.25 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.10 1.15 6.69 -51.93 -0.35 0.80 16 29 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.08 1.24 5.69 -51.93 -0.30 0.95 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.18 2.41 8.06 -52.48 -0.42 1.99 16 33 H 0.15 2.64 8.06 -52.49 -0.42 2.22 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.17 3.90 3.81 -51.93 -0.20 3.71 16 LS Contribution 268.93 15.07 4.05 4.05 Total: -1.00 -30.10 268.93 -6.81 -36.91 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.63 Total: 4.58 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -1.43 Total: -13.71 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.15 Total: -48.18 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.65 Total: 16.35 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.10 -6.81 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659562640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.545 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds