Wall clock time and date at job start Sun Mar 29 2020 22:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.53005 * 109.46924 * 120.00074 * 2 1 3 5 5 C 1.50707 * 109.46823 * 195.96063 * 4 2 1 6 6 H 1.07999 * 120.00195 * 5.72598 * 5 4 2 7 7 C 1.37875 * 119.99826 * 185.72960 * 5 4 2 8 8 N 1.31508 * 120.00035 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99980 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47257 * 90.00195 * 9 7 5 11 11 H 1.48503 * 109.47119 * 210.00219 * 9 7 5 12 12 H 1.48505 * 109.47301 * 329.99747 * 9 7 5 13 13 N 1.46900 * 109.46861 * 239.99511 * 2 1 3 14 14 C 1.47076 * 110.99850 * 43.98617 * 13 2 1 15 15 C 1.53395 * 109.67709 * 53.32052 * 14 13 2 16 16 N 1.46638 * 108.26917 * 49.82059 * 15 14 13 17 17 N 1.39384 * 128.42956 * 163.48459 * 16 15 14 18 18 C 1.31111 * 108.07792 * 180.20640 * 17 16 15 19 19 C 1.40127 * 108.27749 * 359.93662 * 18 17 16 20 20 C 1.34550 * 107.78871 * 359.96385 * 19 18 17 21 21 C 1.47367 * 110.99679 * 168.12392 * 13 2 1 22 22 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47167 * 300.00250 * 1 2 3 24 24 H 1.08995 * 109.47150 * 59.99982 * 1 2 3 25 25 H 1.08998 * 109.46886 * 315.95817 * 4 2 1 26 26 H 1.09003 * 109.47315 * 75.96076 * 4 2 1 27 27 H 0.97000 * 120.00400 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.48474 * 293.24095 * 14 13 2 29 29 H 1.09004 * 109.43087 * 173.36667 * 14 13 2 30 30 H 1.08991 * 109.70837 * 290.11861 * 15 14 13 31 31 H 1.09003 * 109.70897 * 169.52457 * 15 14 13 32 32 H 1.08006 * 125.86561 * 179.97438 * 18 17 16 33 33 H 1.07994 * 126.10729 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.75051 * 166.25879 * 21 13 2 35 35 H 1.08994 * 109.79170 * 45.55099 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.4954 -0.3920 1.4604 6 1 3.9815 0.3365 0.8285 7 6 4.2064 -1.0210 2.4603 8 7 5.4766 -0.7341 2.6443 9 14 3.3656 -2.2808 3.5537 10 1 3.5018 -3.6303 2.9492 11 1 4.0005 -2.2733 4.8961 12 1 1.9262 -1.9401 3.6850 13 7 2.0196 -0.6926 -1.1994 14 6 1.2638 -0.2800 -2.3917 15 6 1.2787 1.2494 -2.5090 16 7 2.6656 1.7071 -2.3771 17 7 3.2058 2.9449 -2.7218 18 6 4.4859 2.9230 -2.4390 19 6 4.7962 1.6661 -1.9030 20 6 3.6634 0.9405 -1.8742 21 6 3.4650 -0.4720 -1.3835 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 1.4646 -0.3970 2.1164 26 1 1.9261 -1.7976 1.1194 27 1 5.9768 -1.1764 3.3479 28 1 0.2340 -0.6271 -2.3075 29 1 1.7212 -0.7161 -3.2799 30 1 0.6710 1.6848 -1.7158 31 1 0.8839 1.5475 -3.4803 32 1 5.1817 3.7348 -2.5922 33 1 5.7704 1.3382 -1.5719 34 1 3.8542 -1.1755 -2.1195 35 1 3.9830 -0.6081 -0.4342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659562640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:43 Heat of formation + Delta-G solvation = 75.351659 kcal Electronic energy + Delta-G solvation = -17485.199847 eV Core-core repulsion = 14905.587701 eV Total energy + Delta-G solvation = -2579.612146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.62561 -39.52670 -35.49578 -33.96529 -33.30814 -31.47350 -29.91700 -28.99514 -25.84685 -25.05635 -23.69552 -22.11015 -21.54477 -19.48737 -18.82580 -17.76641 -16.95835 -16.86035 -16.22187 -15.86584 -15.24247 -15.01393 -14.61831 -14.29366 -14.08929 -13.55168 -13.50407 -13.43866 -13.10670 -12.95641 -12.58534 -12.54764 -12.25128 -11.90279 -11.78799 -11.63827 -11.18283 -11.04812 -10.66478 -10.07900 -9.47525 -9.33677 -8.20266 -6.19876 0.91774 1.40469 1.42151 1.52598 1.55723 1.88957 2.41934 2.97249 3.14753 3.50429 3.73117 3.93068 4.06587 4.17061 4.26008 4.36425 4.44866 4.59169 4.66354 4.70124 4.80531 4.85244 4.96247 5.07168 5.14043 5.22876 5.30695 5.42934 5.47908 5.70129 5.75483 6.05082 6.12722 6.24954 6.39157 6.76528 6.82775 7.40135 8.93881 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.009682 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.841746 B = 2891.360416 C = 3594.075015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.094 3.906 3 H 0.009 0.991 4 C -0.005 4.005 5 C -0.517 4.517 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.251 1.251 13 N -0.519 5.519 14 C 0.038 3.962 15 C 0.088 3.912 16 N -0.376 5.376 17 N -0.329 5.329 18 C 0.041 3.959 19 C -0.290 4.290 20 C 0.061 3.939 21 C 0.083 3.917 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.017 0.983 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.133 0.867 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.211 0.789 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 0.328 -9.928 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 H 0.027 0.973 4 C -0.042 4.042 5 C -0.555 4.555 6 H 0.068 0.932 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.766 3.234 10 H -0.194 1.194 11 H -0.219 1.219 12 H -0.175 1.175 13 N -0.241 5.241 14 C -0.091 4.091 15 C -0.034 4.034 16 N -0.161 5.161 17 N -0.151 5.151 18 C -0.144 4.144 19 C -0.319 4.319 20 C -0.068 4.068 21 C -0.046 4.046 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.227 0.773 33 H 0.161 0.839 34 H 0.116 0.884 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.518 0.441 -10.240 14.686 hybrid contribution 1.339 0.192 1.024 1.697 sum -9.179 0.633 -9.216 13.023 Atomic orbital electron populations 1.22103 0.92664 1.03323 1.02512 1.21514 0.95555 0.93988 0.90320 0.97306 1.19596 0.94566 0.96699 0.93373 1.21451 0.95405 1.23040 1.15569 0.93156 1.25841 0.95170 0.98895 0.98607 1.70055 1.09712 1.44800 1.33874 0.85786 0.79858 0.79874 0.77835 1.19368 1.21907 1.17504 1.62386 1.02331 1.56692 1.02693 1.22906 1.02679 0.89614 0.93882 1.22889 0.77630 0.98177 1.04717 1.48822 1.08902 1.09492 1.48864 1.77018 1.10969 1.01682 1.25414 1.24372 0.93197 0.98414 0.98446 1.21271 0.99846 0.96141 1.14686 1.22217 0.89565 0.97480 0.97499 1.21979 0.90910 0.86847 1.04830 0.90654 0.92209 0.90560 0.96460 0.95203 0.92791 0.84877 0.89145 0.89684 0.87014 0.77271 0.83862 0.88414 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.06 71.98 0.58 -3.42 16 2 C 0.09 3.47 1.58 44.92 0.07 3.55 16 3 H 0.01 0.38 6.38 -2.39 -0.02 0.37 16 4 C 0.00 -0.21 3.67 29.85 0.11 -0.10 16 5 C -0.52 -27.96 7.34 25.60 0.19 -27.77 16 6 H 0.05 3.02 6.16 -2.91 -0.02 3.00 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 9 Si 0.94 43.38 27.36 68.60 1.88 45.25 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.25 -10.82 6.71 99.48 0.67 -10.16 16 13 N -0.52 -17.45 4.83 -872.69 -4.22 -21.66 16 14 C 0.04 0.93 5.32 86.40 0.46 1.38 16 15 C 0.09 2.32 6.36 86.49 0.55 2.87 16 16 N -0.38 -13.35 3.84 -333.77 -1.28 -14.63 16 17 N -0.33 -12.16 12.64 -56.70 -0.72 -12.88 16 18 C 0.04 1.41 12.04 85.26 1.03 2.44 16 19 C -0.29 -11.21 10.77 21.88 0.24 -10.98 16 20 C 0.06 2.38 5.67 41.19 0.23 2.61 16 21 C 0.08 3.21 5.72 85.51 0.49 3.70 16 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.08 1.61 4.85 -2.39 -0.01 1.60 16 25 H 0.02 0.77 7.49 -2.39 -0.02 0.75 16 26 H 0.03 1.32 7.25 -2.39 -0.02 1.30 16 27 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.13 2.38 6.69 -2.39 -0.02 2.37 16 29 H 0.09 2.04 8.07 -2.39 -0.02 2.02 16 30 H 0.09 2.25 5.69 -2.39 -0.01 2.24 16 31 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.21 5.45 8.06 -2.91 -0.02 5.42 16 33 H 0.14 5.45 8.06 -2.91 -0.02 5.43 16 34 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.13 6.22 3.81 -2.39 -0.01 6.21 16 Total: -1.00 -66.85 268.93 1.42 -65.44 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.05 Total: 19.92 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 4.41 Total: -24.56 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -5.91 Total: -106.04 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.25 kcal Total: -66.85 1.42 -65.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659562640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.787 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds