Wall clock time and date at job start Sun Mar 29 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47451 * 2 1 4 4 C 1.50696 * 109.47039 * 239.99553 * 2 1 3 5 5 H 1.08007 * 119.99988 * 239.99729 * 4 2 1 6 6 C 1.37875 * 119.99907 * 60.00419 * 4 2 1 7 7 N 1.31508 * 120.00262 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47048 * 60.00347 * 8 6 4 10 10 H 1.48504 * 109.46904 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47321 * 300.00005 * 8 6 4 12 12 N 1.46904 * 109.46852 * 120.00029 * 2 1 3 13 13 C 1.46905 * 110.99941 * 275.00107 * 12 2 1 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 2 15 15 C 1.39786 * 126.05241 * 259.97287 * 14 13 12 16 16 N 1.30703 * 108.20766 * 179.97438 * 15 14 13 17 17 N 1.40412 * 108.35078 * 359.92814 * 16 15 14 18 18 C 1.34902 * 107.69438 * 0.17094 * 17 16 15 19 19 C 1.51429 * 110.17370 * 179.81441 * 18 17 16 20 20 C 1.54550 * 104.19443 * 343.47762 * 19 18 17 21 21 C 1.47145 * 141.40479 * 180.35251 * 17 16 15 22 22 H 1.09001 * 109.46951 * 60.00288 * 1 2 3 23 23 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47373 * 300.00078 * 1 2 3 25 25 H 0.96999 * 120.00496 * 180.02562 * 7 6 4 26 26 H 1.00893 * 111.00483 * 151.04755 * 12 2 1 27 27 H 1.08994 * 109.47055 * 59.99918 * 13 12 2 28 28 H 1.09003 * 109.46403 * 300.00079 * 13 12 2 29 29 H 1.07999 * 125.89281 * 359.94563 * 15 14 13 30 30 H 1.09002 * 110.48644 * 224.80296 * 19 18 17 31 31 H 1.08992 * 110.48473 * 102.15403 * 19 18 17 32 32 H 1.09006 * 110.97751 * 267.02232 * 20 19 18 33 33 H 1.09009 * 111.00581 * 143.26921 * 20 19 18 34 34 H 1.09002 * 110.22936 * 77.89422 * 21 17 16 35 35 H 1.09000 * 110.22564 * 316.02540 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8279 -2.5200 -4.0080 10 1 1.8270 -0.4202 -5.2204 11 1 3.8075 -1.1193 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3470 14 6 2.5883 -0.5215 3.5558 15 6 1.8050 -1.0325 4.5947 16 7 2.5982 -1.6102 5.4582 17 7 3.9185 -1.4879 4.9962 18 6 3.8836 -0.8133 3.8285 19 6 5.2851 -0.6450 3.2805 20 6 6.2025 -0.9415 4.4884 21 6 5.3000 -1.8465 5.3541 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7083 1.1607 -3.4844 26 1 2.9172 -1.1205 1.0289 27 1 1.0870 0.6163 2.5525 28 1 2.7588 1.0462 2.1182 29 1 0.7301 -0.9617 4.6710 30 1 5.4369 0.3751 2.9276 31 1 5.4690 -1.3588 2.4776 32 1 6.4584 -0.0241 5.0185 33 1 7.1016 -1.4724 4.1752 34 1 5.4882 -2.8956 5.1258 35 1 5.4773 -1.6540 6.4122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:34 Heat of formation + Delta-G solvation = 85.016495 kcal Electronic energy + Delta-G solvation = -16355.087268 eV Core-core repulsion = 13775.894221 eV Total energy + Delta-G solvation = -2579.193047 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.47833 -36.41174 -35.65230 -32.79710 -30.88356 -29.25302 -28.52906 -26.70327 -25.15787 -23.28516 -22.14164 -20.51730 -19.71108 -19.06348 -16.68629 -16.39381 -15.33434 -14.68982 -14.24547 -14.13366 -14.01846 -13.58434 -13.41593 -13.05294 -12.82310 -12.11543 -12.00138 -11.72061 -11.50829 -11.28397 -11.01683 -10.75895 -10.75076 -10.49204 -10.12951 -10.06631 -9.87119 -8.98317 -8.78623 -8.44045 -8.03518 -7.11559 -5.98502 -4.04743 2.08095 2.47767 3.07901 3.32669 3.37324 3.40197 4.05484 4.43497 4.49068 4.56717 4.79692 5.07794 5.31932 5.32550 5.38555 5.43698 5.65250 5.71324 5.72935 5.80843 5.86074 6.27751 6.39152 6.61939 6.94081 6.99151 7.04880 7.21707 7.31220 7.58952 7.82581 7.97052 8.03013 8.34226 8.49579 8.76131 9.07153 9.60953 11.07688 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.005730 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.756268 B = 4885.302678 C = 5437.918481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.683 5.683 13 C 0.136 3.864 14 C -0.199 4.199 15 C 0.064 3.936 16 N -0.286 5.286 17 N -0.401 5.401 18 C 0.059 3.941 19 C -0.067 4.067 20 C -0.131 4.131 21 C 0.134 3.866 22 H 0.079 0.921 23 H 0.031 0.969 24 H 0.005 0.995 25 H 0.261 0.739 26 H 0.327 0.673 27 H 0.070 0.930 28 H 0.022 0.978 29 H 0.187 0.813 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.332 -1.758 12.791 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.314 5.314 13 C 0.005 3.995 14 C -0.210 4.210 15 C -0.121 4.121 16 N -0.106 5.106 17 N -0.184 5.184 18 C -0.069 4.069 19 C -0.106 4.106 20 C -0.170 4.170 21 C 0.013 3.987 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.024 0.976 25 H 0.071 0.929 26 H 0.144 0.856 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.204 0.796 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.737 -2.643 14.125 16.818 hybrid contribution 0.883 0.445 -1.828 2.078 sum 9.620 -2.198 12.297 15.767 Atomic orbital electron populations 1.21707 0.97930 0.99306 0.99290 1.19107 0.92635 0.92283 0.85663 0.98243 1.21234 1.31388 1.12398 0.90523 0.92404 1.24910 0.95106 0.95004 0.98957 1.69886 1.36633 1.22916 1.23475 0.86607 0.79006 0.79825 0.82203 1.20242 1.21319 1.20401 1.60762 1.31977 1.33076 1.05594 1.20149 0.99113 0.92343 0.87895 1.19483 0.89960 1.10808 1.00743 1.23780 0.99757 0.96591 0.92022 1.77246 0.84688 1.25360 1.23316 1.49976 1.05174 1.44497 1.18778 1.21984 0.96227 0.98401 0.90281 1.20851 0.87646 1.04374 0.97710 1.22783 0.97975 1.00313 0.95915 1.22199 0.75581 1.00087 1.00877 0.90231 0.95022 0.97634 0.92924 0.85576 0.91194 0.96048 0.79622 0.88868 0.88568 0.89737 0.88285 0.89788 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 2 C 0.21 5.41 2.60 -68.86 -0.18 5.23 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.29 8.59 -34.44 -0.30 -14.59 16 5 H 0.06 1.58 7.62 -52.48 -0.40 1.18 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.55 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.68 -15.07 6.29 -109.22 -0.69 -15.76 16 13 C 0.14 2.57 5.97 -4.97 -0.03 2.54 16 14 C -0.20 -3.42 5.62 -105.01 -0.59 -4.01 16 15 C 0.06 1.06 11.95 -17.45 -0.21 0.85 16 16 N -0.29 -4.86 12.69 30.58 0.39 -4.47 16 17 N -0.40 -5.97 4.86 -55.67 -0.27 -6.24 16 18 C 0.06 0.91 7.41 -81.85 -0.61 0.30 16 19 C -0.07 -0.75 6.86 -26.71 -0.18 -0.93 16 20 C -0.13 -1.01 7.17 -25.20 -0.18 -1.19 16 21 C 0.13 1.31 7.77 -2.97 -0.02 1.29 16 22 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.33 7.11 8.22 -39.30 -0.32 6.79 16 27 H 0.07 1.32 7.44 -51.93 -0.39 0.94 16 28 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 29 H 0.19 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 290.46 15.07 4.38 4.38 Total: -1.00 -31.82 290.46 -7.79 -39.61 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.15 Total: 2.80 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.05 Total: -11.68 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.06 Total: -51.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.82 -7.79 -39.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.627 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds