Wall clock time and date at job start Sun Mar 29 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47451 * 2 1 4 4 C 1.50696 * 109.47039 * 239.99553 * 2 1 3 5 5 H 1.08007 * 119.99988 * 239.99729 * 4 2 1 6 6 C 1.37875 * 119.99907 * 60.00419 * 4 2 1 7 7 N 1.31508 * 120.00262 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47048 * 60.00347 * 8 6 4 10 10 H 1.48504 * 109.46904 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47321 * 300.00005 * 8 6 4 12 12 N 1.46904 * 109.46852 * 120.00029 * 2 1 3 13 13 C 1.46905 * 110.99941 * 275.00107 * 12 2 1 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 2 15 15 C 1.39786 * 126.05241 * 259.97287 * 14 13 12 16 16 N 1.30703 * 108.20766 * 179.97438 * 15 14 13 17 17 N 1.40412 * 108.35078 * 359.92814 * 16 15 14 18 18 C 1.34902 * 107.69438 * 0.17094 * 17 16 15 19 19 C 1.51429 * 110.17370 * 179.81441 * 18 17 16 20 20 C 1.54550 * 104.19443 * 343.47762 * 19 18 17 21 21 C 1.47145 * 141.40479 * 180.35251 * 17 16 15 22 22 H 1.09001 * 109.46951 * 60.00288 * 1 2 3 23 23 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47373 * 300.00078 * 1 2 3 25 25 H 0.96999 * 120.00496 * 180.02562 * 7 6 4 26 26 H 1.00893 * 111.00483 * 151.04755 * 12 2 1 27 27 H 1.08994 * 109.47055 * 59.99918 * 13 12 2 28 28 H 1.09003 * 109.46403 * 300.00079 * 13 12 2 29 29 H 1.07999 * 125.89281 * 359.94563 * 15 14 13 30 30 H 1.09002 * 110.48644 * 224.80296 * 19 18 17 31 31 H 1.08992 * 110.48473 * 102.15403 * 19 18 17 32 32 H 1.09006 * 110.97751 * 267.02232 * 20 19 18 33 33 H 1.09009 * 111.00581 * 143.26921 * 20 19 18 34 34 H 1.09002 * 110.22936 * 77.89422 * 21 17 16 35 35 H 1.09000 * 110.22564 * 316.02540 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8279 -2.5200 -4.0080 10 1 1.8270 -0.4202 -5.2204 11 1 3.8075 -1.1193 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3470 14 6 2.5883 -0.5215 3.5558 15 6 1.8050 -1.0325 4.5947 16 7 2.5982 -1.6102 5.4582 17 7 3.9185 -1.4879 4.9962 18 6 3.8836 -0.8133 3.8285 19 6 5.2851 -0.6450 3.2805 20 6 6.2025 -0.9415 4.4884 21 6 5.3000 -1.8465 5.3541 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7083 1.1607 -3.4844 26 1 2.9172 -1.1205 1.0289 27 1 1.0870 0.6163 2.5525 28 1 2.7588 1.0462 2.1182 29 1 0.7301 -0.9617 4.6710 30 1 5.4369 0.3751 2.9276 31 1 5.4690 -1.3588 2.4776 32 1 6.4584 -0.0241 5.0185 33 1 7.1016 -1.4724 4.1752 34 1 5.4882 -2.8956 5.1258 35 1 5.4773 -1.6540 6.4122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663172158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:34 Heat of formation + Delta-G solvation = 63.389373 kcal Electronic energy + Delta-G solvation = -16356.025091 eV Core-core repulsion = 13775.894221 eV Total energy + Delta-G solvation = -2580.130870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.60929 -37.82812 -37.03858 -34.68616 -32.40132 -30.41187 -29.89832 -28.09626 -27.21042 -24.81189 -22.99267 -21.69620 -21.60119 -20.28087 -18.53067 -17.42430 -16.96531 -16.34492 -15.67198 -15.45960 -15.22594 -15.09210 -14.66298 -14.37406 -13.98793 -13.66214 -13.52629 -13.03089 -12.82183 -12.67412 -12.50660 -12.40363 -12.27162 -12.14829 -12.00794 -11.86986 -11.45891 -10.85953 -10.53816 -10.08892 -9.34982 -8.90221 -8.09451 -6.23828 0.90957 1.44239 1.46802 1.50095 1.54155 1.79464 2.44682 3.18710 3.22183 3.63949 3.80721 3.94392 3.98909 4.20397 4.26697 4.52693 4.56727 4.59013 4.82040 4.84699 4.88860 5.00428 5.02707 5.12775 5.13387 5.26447 5.28027 5.52041 5.70001 5.75051 5.90574 5.95433 6.26508 6.54697 6.82664 6.84683 7.05351 7.46528 8.95904 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.005730 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.756268 B = 4885.302678 C = 5437.918481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.029 1.029 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.681 5.681 13 C 0.146 3.854 14 C -0.232 4.232 15 C 0.057 3.943 16 N -0.314 5.314 17 N -0.401 5.401 18 C 0.061 3.939 19 C -0.073 4.073 20 C -0.113 4.113 21 C 0.119 3.881 22 H 0.057 0.943 23 H 0.025 0.975 24 H 0.023 0.977 25 H 0.262 0.738 26 H 0.329 0.671 27 H 0.065 0.935 28 H 0.018 0.982 29 H 0.200 0.800 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.098 0.902 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.325 -2.612 13.132 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.012 1.012 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.312 5.312 13 C 0.016 3.984 14 C -0.244 4.244 15 C -0.128 4.128 16 N -0.134 5.134 17 N -0.185 5.185 18 C -0.069 4.069 19 C -0.112 4.112 20 C -0.151 4.151 21 C 0.000 4.000 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.146 0.854 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.217 0.783 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.152 0.848 34 H 0.116 0.884 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.749 -3.509 14.503 18.389 hybrid contribution 0.309 0.714 -1.860 2.015 sum 11.057 -2.796 12.643 17.027 Atomic orbital electron populations 1.21545 0.97861 0.98711 0.99062 1.18923 0.92688 0.90840 0.86874 1.01161 1.21545 1.31737 1.12625 0.91626 0.92420 1.25725 0.95180 0.95664 1.01980 1.70017 1.37408 1.24085 1.24195 0.85553 0.78843 0.78534 0.78318 1.19908 1.20930 1.19329 1.60700 1.32081 1.33366 1.05018 1.20000 0.98938 0.91930 0.87564 1.19382 0.91356 1.12976 1.00689 1.24041 1.00623 0.96341 0.91809 1.77151 0.86017 1.26192 1.24063 1.50450 1.05959 1.43565 1.18477 1.22575 0.97239 0.96796 0.90326 1.21070 0.85963 1.04826 0.99297 1.22843 0.97806 1.00842 0.93634 1.22720 0.73267 1.01514 1.02534 0.92452 0.95596 0.95823 0.92844 0.85434 0.91630 0.96432 0.78336 0.88468 0.88126 0.88496 0.84846 0.88382 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.83 9.19 71.98 0.66 -5.17 16 2 C 0.22 11.24 2.60 44.17 0.11 11.36 16 3 H -0.03 -1.66 7.80 -2.39 -0.02 -1.68 16 4 C -0.54 -29.85 8.59 25.60 0.22 -29.63 16 5 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 8 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 12 N -0.68 -30.29 6.29 -499.46 -3.14 -33.43 16 13 C 0.15 5.60 5.97 85.56 0.51 6.11 16 14 C -0.23 -7.97 5.62 -20.11 -0.11 -8.09 16 15 C 0.06 1.87 11.95 85.24 1.02 2.89 16 16 N -0.31 -10.47 12.69 -57.15 -0.73 -11.19 16 17 N -0.40 -11.32 4.86 -330.05 -1.60 -12.92 16 18 C 0.06 1.79 7.41 41.69 0.31 2.10 16 19 C -0.07 -1.45 6.86 30.61 0.21 -1.24 16 20 C -0.11 -1.31 7.17 31.59 0.23 -1.08 16 21 C 0.12 1.96 7.77 86.72 0.67 2.64 16 22 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 23 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.02 1.07 7.45 -2.39 -0.02 1.06 16 25 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.33 14.32 8.22 -89.70 -0.74 13.59 16 27 H 0.07 2.53 7.44 -2.39 -0.02 2.51 16 28 H 0.02 0.68 8.06 -2.39 -0.02 0.66 16 29 H 0.20 5.60 8.06 -2.91 -0.02 5.58 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -68.52 290.46 1.42 -67.09 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.34 Total: 16.87 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.28 Total: -18.91 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -5.23 Total: -110.50 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.52 1.42 -67.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.482 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds