Wall clock time and date at job start Sun Mar 29 2020 22:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47158 * 2 1 4 4 C 1.50703 * 109.47406 * 120.00523 * 2 1 3 5 5 H 1.07999 * 120.00095 * 120.00075 * 4 2 1 6 6 C 1.37870 * 119.99731 * 300.00390 * 4 2 1 7 7 N 1.31518 * 120.00148 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99760 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47218 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47210 * 119.99694 * 8 6 4 11 11 H 1.48507 * 109.46827 * 239.99440 * 8 6 4 12 12 N 1.46907 * 109.46996 * 240.00802 * 2 1 3 13 13 C 1.46892 * 111.00257 * 85.00139 * 12 2 1 14 14 C 1.50700 * 109.47374 * 180.02562 * 13 12 2 15 15 C 1.40287 * 126.11299 * 259.88699 * 14 13 12 16 16 N 1.30708 * 108.18736 * 179.97438 * 15 14 13 17 17 N 1.40539 * 108.28502 * 359.95593 * 16 15 14 18 18 C 1.34908 * 107.84283 * 0.20546 * 17 16 15 19 19 C 1.51426 * 110.17182 * 179.72552 * 18 17 16 20 20 C 1.54550 * 104.19786 * 343.48610 * 19 18 17 21 21 C 1.47145 * 141.25681 * 180.26736 * 17 16 15 22 22 H 1.08992 * 109.47074 * 299.99073 * 1 2 3 23 23 H 1.09005 * 109.47016 * 59.99852 * 1 2 3 24 24 H 1.09004 * 109.46960 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99923 * 180.02562 * 7 6 4 26 26 H 1.00906 * 110.99614 * 208.95187 * 12 2 1 27 27 H 1.08997 * 109.47817 * 59.99505 * 13 12 2 28 28 H 1.09007 * 109.46744 * 299.99577 * 13 12 2 29 29 H 1.07994 * 125.91341 * 0.02562 * 15 14 13 30 30 H 1.08990 * 110.48583 * 224.80526 * 19 18 17 31 31 H 1.09000 * 110.47869 * 102.15886 * 19 18 17 32 32 H 1.08999 * 110.97156 * 267.02111 * 20 19 18 33 33 H 1.09003 * 111.00655 * 143.26923 * 20 19 18 34 34 H 1.09002 * 110.22936 * 78.02205 * 21 17 16 35 35 H 1.09000 * 110.22564 * 316.15324 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9435 0.8299 2.6034 8 14 2.3227 -1.1199 4.0078 9 1 3.1476 -2.2865 3.6035 10 1 3.1474 -0.1862 4.8159 11 1 1.1679 -1.5870 4.8163 12 7 2.0197 -0.6924 -1.1996 13 6 2.0825 0.2228 -2.3469 14 6 2.5873 -0.5215 -3.5561 15 6 3.8979 -0.4945 -4.0560 16 7 3.9477 -1.2636 -5.1117 17 7 2.6694 -1.8088 -5.3208 18 6 1.8547 -1.3344 -4.3558 19 6 0.4559 -1.8856 -4.5357 20 6 0.4431 -2.4215 -5.9852 21 6 1.9402 -2.7100 -6.2271 22 1 -0.3633 0.5136 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7095 1.1614 3.4845 26 1 2.9174 -1.1204 -1.0289 27 1 2.7588 1.0464 -2.1182 28 1 1.0870 0.6165 -2.5525 29 1 4.7231 0.0643 -3.6401 30 1 -0.2842 -1.0947 -4.4149 31 1 0.2707 -2.6941 -3.8284 32 1 0.0749 -1.6647 -6.6777 33 1 -0.1471 -3.3350 -6.0589 34 1 2.1672 -3.7491 -5.9884 35 1 2.2028 -2.4959 -7.2631 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:37 Heat of formation + Delta-G solvation = 84.312059 kcal Electronic energy + Delta-G solvation = -16348.142021 eV Core-core repulsion = 13768.918428 eV Total energy + Delta-G solvation = -2579.223594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42548 -36.40025 -35.60797 -32.76924 -30.85830 -29.23221 -28.56614 -26.59999 -25.17383 -23.29847 -22.10135 -20.44690 -19.70409 -19.09160 -16.60378 -16.38582 -15.25611 -14.81214 -14.34114 -14.13816 -13.86494 -13.50949 -13.39595 -12.99411 -12.78405 -12.01293 -11.95285 -11.69581 -11.52572 -11.24226 -11.14045 -10.89809 -10.70375 -10.31055 -10.20565 -10.06597 -9.82778 -8.97918 -8.77721 -8.43556 -7.99663 -7.12854 -5.98297 -4.04117 2.11123 2.48570 3.05466 3.31348 3.39135 3.43945 4.10098 4.44599 4.55662 4.60875 4.84073 5.09327 5.32961 5.37648 5.39177 5.46411 5.54944 5.79067 5.81951 5.90801 5.96929 6.20836 6.40611 6.64856 6.92467 6.99362 7.06206 7.19657 7.30005 7.58278 7.84029 7.96657 8.02325 8.33775 8.50042 8.77231 9.08411 9.61831 11.08017 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.039257 B = 0.005331 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.068583 B = 5251.437606 C = 5460.651617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.514 4.514 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.684 5.684 13 C 0.137 3.863 14 C -0.208 4.208 15 C 0.054 3.946 16 N -0.285 5.285 17 N -0.404 5.404 18 C 0.081 3.919 19 C -0.063 4.063 20 C -0.133 4.133 21 C 0.134 3.866 22 H 0.079 0.921 23 H 0.003 0.997 24 H 0.030 0.970 25 H 0.259 0.741 26 H 0.330 0.670 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.185 0.815 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -4.529 -15.509 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.102 3.898 3 H 0.018 0.982 4 C -0.553 4.553 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.315 5.315 13 C 0.006 3.994 14 C -0.219 4.219 15 C -0.133 4.133 16 N -0.105 5.105 17 N -0.188 5.188 18 C -0.047 4.047 19 C -0.102 4.102 20 C -0.171 4.171 21 C 0.012 3.988 22 H 0.098 0.902 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.202 0.798 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.974 -5.235 -16.658 17.488 hybrid contribution 0.688 0.437 1.783 1.961 sum -0.286 -4.798 -14.875 15.632 Atomic orbital electron populations 1.21699 0.97999 0.99174 0.99232 1.19117 0.92553 0.92365 0.85751 0.98213 1.21318 1.31126 1.12376 0.90489 0.92257 1.24915 0.95120 0.95017 0.98996 1.69912 1.36880 1.22963 1.23239 0.86491 0.78590 0.79635 0.82972 1.19802 1.21131 1.21036 1.60763 1.32169 1.33025 1.05582 1.20119 0.98913 0.92500 0.87856 1.19585 0.92823 1.07456 1.02035 1.23950 0.97358 0.98185 0.93763 1.77275 0.97604 1.15363 1.20255 1.50040 1.07011 1.37279 1.24455 1.21892 0.93544 0.97240 0.92004 1.20813 0.91802 1.01552 0.96031 1.22804 0.94006 1.02978 0.97357 1.22200 0.90312 0.92760 0.93492 0.90241 0.97754 0.95097 0.93064 0.85305 0.95705 0.91652 0.79795 0.88865 0.88351 0.89805 0.88334 0.89831 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 9.19 37.16 0.34 -2.72 16 2 C 0.21 5.37 2.60 -68.86 -0.18 5.19 16 3 H 0.00 0.01 7.80 -51.93 -0.40 -0.40 16 4 C -0.51 -14.27 8.59 -34.44 -0.30 -14.56 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.98 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.68 -14.98 6.29 -109.21 -0.69 -15.67 16 13 C 0.14 2.59 5.97 -4.98 -0.03 2.56 16 14 C -0.21 -3.56 5.64 -104.82 -0.59 -4.15 16 15 C 0.05 0.87 11.98 -17.26 -0.21 0.66 16 16 N -0.29 -4.82 12.70 30.69 0.39 -4.43 16 17 N -0.40 -6.05 4.85 -55.67 -0.27 -6.32 16 18 C 0.08 1.26 7.41 -81.85 -0.61 0.66 16 19 C -0.06 -0.73 6.86 -26.71 -0.18 -0.92 16 20 C -0.13 -1.05 7.17 -25.20 -0.18 -1.23 16 21 C 0.13 1.33 7.77 -2.97 -0.02 1.30 16 22 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.33 7.28 8.22 -39.29 -0.32 6.96 16 27 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 28 H 0.07 1.24 7.44 -51.93 -0.39 0.86 16 29 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 290.51 15.07 4.38 4.38 Total: -1.00 -31.66 290.51 -7.78 -39.44 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.15 Total: 2.77 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.05 Total: -11.61 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.06 Total: -51.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.66 -7.78 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.756 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds