Wall clock time and date at job start Sun Mar 29 2020 22:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86794 * 120.00281 * 2 1 4 4 H 1.48503 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47212 * 299.99599 * 3 2 1 6 6 H 1.48504 * 109.47030 * 59.99950 * 3 2 1 7 7 C 1.40127 * 119.99319 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99290 * 179.97438 * 7 2 1 9 9 C 1.46163 * 120.00200 * 0.02562 * 7 2 1 10 10 O 1.21734 * 120.00523 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99858 * 179.97438 * 9 7 2 12 12 C 1.39531 * 120.00165 * 185.27346 * 11 9 7 13 13 C 1.39045 * 120.08289 * 33.38951 * 12 11 9 14 14 C 1.38041 * 119.91733 * 179.97438 * 13 12 11 15 15 C 1.38345 * 120.08194 * 0.28053 * 14 13 12 16 16 C 1.38306 * 120.16722 * 359.44246 * 15 14 13 17 17 N 1.48020 * 119.95933 * 180.25477 * 16 15 14 18 18 O 1.21796 * 120.00165 * 180.29793 * 17 16 15 19 19 O 1.21804 * 119.99774 * 0.30349 * 17 16 15 20 20 C 1.38081 * 120.08649 * 0.55661 * 16 15 14 21 21 H 0.97002 * 119.99528 * 359.97438 * 1 2 3 22 22 H 0.97008 * 120.00190 * 5.28179 * 11 9 7 23 23 H 1.08004 * 120.04135 * 0.02562 * 13 12 11 24 24 H 1.08001 * 119.95418 * 179.97438 * 14 13 12 25 25 H 1.08009 * 119.91462 * 179.72549 * 15 14 13 26 26 H 1.07993 * 120.04608 * 179.74420 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 3.7004 1.3462 0.0006 5 1 1.8818 2.3963 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0068 -1.2136 0.0005 8 1 3.0869 -1.2136 0.0001 9 6 1.2759 -2.4794 0.0005 10 8 0.0586 -2.4794 0.0005 11 7 1.9498 -3.6466 0.0005 12 6 1.2565 -4.8524 -0.1105 13 6 0.0948 -4.9209 -0.8715 14 6 -0.5881 -6.1157 -0.9795 15 6 -0.1211 -7.2427 -0.3270 16 6 1.0372 -7.1799 0.4262 17 7 1.5357 -8.3899 1.1178 18 8 2.5527 -8.3342 1.7857 19 8 0.9289 -9.4414 1.0189 20 6 1.7257 -5.9884 0.5390 21 1 -0.4849 0.8401 0.0004 22 1 2.9167 -3.6485 0.0779 23 1 -0.2724 -4.0406 -1.3781 24 1 -1.4907 -6.1695 -1.5700 25 1 -0.6600 -8.1751 -0.4097 26 1 2.6278 -5.9391 1.1306 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000032398.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:28 Heat of formation + Delta-G solvation = -19.723697 kcal Electronic energy + Delta-G solvation = -15685.006368 eV Core-core repulsion = 12731.886594 eV Total energy + Delta-G solvation = -2953.119774 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.93048 -39.61244 -37.31657 -36.34457 -33.87909 -32.71937 -31.53516 -29.59784 -26.57297 -26.20402 -22.59859 -22.38875 -20.46437 -18.53343 -18.52564 -17.75046 -17.30349 -16.23690 -15.71026 -15.60865 -14.87577 -14.21693 -13.86766 -13.19258 -12.84562 -12.46562 -11.94020 -11.71844 -11.44313 -11.34008 -11.27019 -10.96220 -10.95352 -10.85192 -10.46717 -9.88908 -9.24423 -9.14078 -8.08417 -7.63376 -6.57015 -5.05233 0.15473 1.32323 1.66593 1.73063 2.94002 3.03447 3.07738 3.62727 3.80465 4.17705 4.23939 4.74364 4.97285 5.22763 5.29199 5.39740 5.48904 5.68414 5.97085 6.35792 6.42830 6.49521 6.78191 7.09225 7.39404 7.61835 7.88748 7.89226 8.63489 8.87883 10.08589 10.32664 Molecular weight = 236.06amu Principal moments of inertia in cm(-1) A = 0.053864 B = 0.005431 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.704664 B = 5154.322835 C = 5556.257565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.538 3.462 10 O -0.559 6.559 11 N -0.694 5.694 12 C 0.200 3.800 13 C -0.078 4.078 14 C -0.098 4.098 15 C -0.101 4.101 16 C -0.024 4.024 17 N 0.035 4.965 18 O -0.172 6.172 19 O -0.174 6.174 20 C -0.120 4.120 21 H 0.274 0.726 22 H 0.399 0.601 23 H 0.157 0.843 24 H 0.142 0.858 25 H 0.144 0.856 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -6.924 -2.235 7.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.346 3.654 10 O -0.441 6.441 11 N -0.337 5.337 12 C 0.098 3.902 13 C -0.100 4.100 14 C -0.118 4.118 15 C -0.122 4.122 16 C -0.107 4.107 17 N 0.552 4.448 18 O -0.386 6.386 19 O -0.388 6.388 20 C -0.143 4.143 21 H 0.085 0.915 22 H 0.234 0.766 23 H 0.175 0.825 24 H 0.160 0.840 25 H 0.162 0.838 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.747 -6.088 -2.564 6.648 hybrid contribution 1.052 0.454 0.344 1.197 sum 1.799 -5.634 -2.219 6.317 Atomic orbital electron populations 1.69973 1.07246 1.28136 1.32883 1.25779 0.94787 1.00754 0.92382 0.86157 0.80458 0.80811 0.78552 1.18497 1.19838 1.19841 1.20892 0.94048 0.88638 1.53215 0.90590 1.18496 0.87535 0.81896 0.77423 1.90645 1.13608 1.85721 1.54176 1.44344 1.10114 1.03679 1.75534 1.17727 0.93592 0.86368 0.92464 1.21892 0.94199 0.98698 0.95168 1.21044 1.00261 0.91105 0.99380 1.20820 0.94066 1.00729 0.96608 1.20708 1.00017 0.85138 1.04845 1.43709 0.99639 1.02540 0.98913 1.94506 1.13892 1.91908 1.38325 1.94485 1.58308 1.18459 1.67520 1.20679 1.02603 0.90548 1.00516 0.91480 0.76629 0.82541 0.83979 0.83834 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.50 11.82 55.55 0.66 -19.85 15 2 C 0.09 2.14 5.50 -17.35 -0.10 2.05 15 3 Si 0.92 18.30 29.56 -169.99 -5.02 13.27 15 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 5 H -0.27 -5.37 7.11 56.52 0.40 -4.96 15 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 7 C -0.53 -13.44 9.54 -35.69 -0.34 -13.78 15 8 H 0.08 1.74 7.85 -52.49 -0.41 1.32 15 9 C 0.54 13.60 7.47 -13.08 -0.10 13.50 15 10 O -0.56 -15.92 12.70 5.16 0.07 -15.86 15 11 N -0.69 -13.91 5.32 -11.20 -0.06 -13.97 15 12 C 0.20 3.69 6.28 -83.77 -0.53 3.17 15 13 C -0.08 -1.41 8.65 -39.35 -0.34 -1.75 15 14 C -0.10 -1.42 10.04 -39.61 -0.40 -1.82 15 15 C -0.10 -1.46 9.55 -39.52 -0.38 -1.84 15 16 C -0.02 -0.38 6.85 -79.98 -0.55 -0.93 15 17 N 0.04 0.60 4.45 33.95 0.15 0.75 15 18 O -0.17 -3.01 18.44 -29.46 -0.54 -3.55 15 19 O -0.17 -2.94 18.44 -29.46 -0.54 -3.48 15 20 C -0.12 -2.00 9.47 -39.35 -0.37 -2.37 15 21 H 0.27 6.73 8.29 -40.82 -0.34 6.39 15 22 H 0.40 6.76 8.79 -40.82 -0.36 6.40 15 23 H 0.16 3.17 6.42 -52.48 -0.34 2.83 15 24 H 0.14 1.59 8.06 -52.49 -0.42 1.17 15 25 H 0.14 1.75 7.60 -52.48 -0.40 1.35 15 26 H 0.15 2.24 7.61 -52.49 -0.40 1.84 15 LS Contribution 250.04 15.07 3.77 3.77 Total: -1.00 -29.89 250.04 -6.09 -35.98 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -1.46 Total: 6.70 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.10 Total: -3.77 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.75 Total: -33.07 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -1.02 Total: -22.89 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.27 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.89 -6.09 -35.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000032398.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.253 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds