Wall clock time and date at job start Sun Mar 29 2020 22:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86794 * 120.00281 * 2 1 4 4 H 1.48503 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47212 * 299.99599 * 3 2 1 6 6 H 1.48504 * 109.47030 * 59.99950 * 3 2 1 7 7 C 1.40127 * 119.99319 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99290 * 179.97438 * 7 2 1 9 9 C 1.46163 * 120.00200 * 0.02562 * 7 2 1 10 10 O 1.21734 * 120.00523 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99858 * 179.97438 * 9 7 2 12 12 C 1.39531 * 120.00165 * 185.27346 * 11 9 7 13 13 C 1.39045 * 120.08289 * 33.38951 * 12 11 9 14 14 C 1.38041 * 119.91733 * 179.97438 * 13 12 11 15 15 C 1.38345 * 120.08194 * 0.28053 * 14 13 12 16 16 C 1.38306 * 120.16722 * 359.44246 * 15 14 13 17 17 N 1.48020 * 119.95933 * 180.25477 * 16 15 14 18 18 O 1.21796 * 120.00165 * 180.29793 * 17 16 15 19 19 O 1.21804 * 119.99774 * 0.30349 * 17 16 15 20 20 C 1.38081 * 120.08649 * 0.55661 * 16 15 14 21 21 H 0.97002 * 119.99528 * 359.97438 * 1 2 3 22 22 H 0.97008 * 120.00190 * 5.28179 * 11 9 7 23 23 H 1.08004 * 120.04135 * 0.02562 * 13 12 11 24 24 H 1.08001 * 119.95418 * 179.97438 * 14 13 12 25 25 H 1.08009 * 119.91462 * 179.72549 * 15 14 13 26 26 H 1.07993 * 120.04608 * 179.74420 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 3.7004 1.3462 0.0006 5 1 1.8818 2.3963 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0068 -1.2136 0.0005 8 1 3.0869 -1.2136 0.0001 9 6 1.2759 -2.4794 0.0005 10 8 0.0586 -2.4794 0.0005 11 7 1.9498 -3.6466 0.0005 12 6 1.2565 -4.8524 -0.1105 13 6 0.0948 -4.9209 -0.8715 14 6 -0.5881 -6.1157 -0.9795 15 6 -0.1211 -7.2427 -0.3270 16 6 1.0372 -7.1799 0.4262 17 7 1.5357 -8.3899 1.1178 18 8 2.5527 -8.3342 1.7857 19 8 0.9289 -9.4414 1.0189 20 6 1.7257 -5.9884 0.5390 21 1 -0.4849 0.8401 0.0004 22 1 2.9167 -3.6485 0.0779 23 1 -0.2724 -4.0406 -1.3781 24 1 -1.4907 -6.1695 -1.5700 25 1 -0.6600 -8.1751 -0.4097 26 1 2.6278 -5.9391 1.1306 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000032398.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:28 Heat of formation + Delta-G solvation = -38.664786 kcal Electronic energy + Delta-G solvation = -15685.827715 eV Core-core repulsion = 12731.886594 eV Total energy + Delta-G solvation = -2953.941121 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.26751 -41.09360 -38.98694 -37.69116 -35.55739 -34.62462 -32.85479 -31.10118 -28.39723 -27.56237 -24.06935 -23.75693 -22.06260 -19.97793 -19.94961 -19.42699 -18.64095 -17.75729 -17.38926 -17.10830 -16.34666 -15.86736 -15.12616 -14.78205 -14.60324 -14.01726 -13.32474 -13.29030 -12.91399 -12.86292 -12.76771 -12.66556 -12.30565 -12.28694 -12.02432 -11.43638 -10.99763 -10.55474 -10.01370 -9.18431 -8.44285 -7.01734 -1.18421 0.02843 0.33837 0.38030 1.37542 1.40468 1.57292 2.15174 2.19613 2.49163 2.65927 3.45692 3.53819 3.75161 3.87166 4.05343 4.11028 4.46432 4.71766 5.08305 5.09632 5.12982 5.21928 5.45066 5.67171 6.01087 6.07883 6.53287 6.72369 7.15101 8.20989 8.48626 Molecular weight = 236.06amu Principal moments of inertia in cm(-1) A = 0.053864 B = 0.005431 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.704664 B = 5154.322835 C = 5556.257565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.032 3.968 3 Si 0.999 3.001 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.095 0.905 9 C 0.530 3.470 10 O -0.601 6.601 11 N -0.689 5.689 12 C 0.173 3.827 13 C -0.094 4.094 14 C -0.082 4.082 15 C -0.082 4.082 16 C -0.034 4.034 17 N 0.035 4.965 18 O -0.193 6.193 19 O -0.159 6.159 20 C -0.112 4.112 21 H 0.280 0.720 22 H 0.412 0.588 23 H 0.128 0.872 24 H 0.180 0.820 25 H 0.176 0.824 26 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.444 -7.668 -2.484 8.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.113 0.887 9 C 0.338 3.662 10 O -0.487 6.487 11 N -0.333 5.333 12 C 0.074 3.926 13 C -0.116 4.116 14 C -0.101 4.101 15 C -0.102 4.102 16 C -0.118 4.118 17 N 0.551 4.449 18 O -0.403 6.403 19 O -0.377 6.377 20 C -0.134 4.134 21 H 0.090 0.910 22 H 0.249 0.751 23 H 0.146 0.854 24 H 0.197 0.803 25 H 0.194 0.806 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.263 -6.870 -2.794 7.524 hybrid contribution 0.840 0.483 0.388 1.044 sum 2.103 -6.388 -2.406 7.142 Atomic orbital electron populations 1.70110 1.09416 1.29548 1.34477 1.26945 0.95571 1.04865 0.91108 0.84931 0.79408 0.75241 0.78596 1.16968 1.19238 1.19476 1.21425 0.95179 0.89321 1.53586 0.88732 1.18720 0.87220 0.83422 0.76875 1.90603 1.15304 1.86864 1.55919 1.43827 1.10652 1.03273 1.75551 1.17834 0.94392 0.86248 0.94149 1.21833 0.94740 0.99293 0.95713 1.21363 1.00621 0.89417 0.98705 1.21217 0.92871 1.01751 0.94370 1.20882 1.00734 0.84772 1.05367 1.43774 0.99580 1.02664 0.98866 1.94521 1.14433 1.92068 1.39238 1.94471 1.57911 1.18491 1.66868 1.20650 1.02798 0.90082 0.99911 0.91026 0.75129 0.85427 0.80255 0.80645 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.08 11.82 21.85 0.26 -44.82 15 2 C 0.03 1.65 5.50 85.33 0.47 2.12 15 3 Si 1.00 37.36 29.56 68.60 2.03 39.39 15 4 H -0.25 -8.54 7.11 99.48 0.71 -7.83 15 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 15 6 H -0.27 -9.85 7.11 99.48 0.71 -9.15 15 7 C -0.56 -28.64 9.54 24.79 0.24 -28.41 15 8 H 0.09 4.29 7.85 -2.91 -0.02 4.27 15 9 C 0.53 27.57 7.47 86.30 0.64 28.21 15 10 O -0.60 -35.64 12.70 -4.46 -0.06 -35.69 15 11 N -0.69 -28.14 5.32 -307.54 -1.64 -29.78 15 12 C 0.17 6.42 6.28 38.30 0.24 6.66 15 13 C -0.09 -3.39 8.65 22.42 0.19 -3.19 15 14 C -0.08 -2.17 10.04 22.25 0.22 -1.94 15 15 C -0.08 -2.08 9.55 22.31 0.21 -1.87 15 16 C -0.03 -1.03 6.85 36.35 0.25 -0.78 15 17 N 0.04 1.12 4.45 -46.51 -0.21 0.91 15 18 O -0.19 -6.50 18.44 18.89 0.35 -6.16 15 19 O -0.16 -4.89 18.44 18.88 0.35 -4.55 15 20 C -0.11 -3.60 9.47 22.42 0.21 -3.38 15 21 H 0.28 14.10 8.29 -92.71 -0.77 13.33 15 22 H 0.41 14.09 8.79 -92.70 -0.82 13.27 15 23 H 0.13 5.40 6.42 -2.91 -0.02 5.38 15 24 H 0.18 3.36 8.06 -2.91 -0.02 3.34 15 25 H 0.18 3.41 7.60 -2.91 -0.02 3.39 15 26 H 0.16 4.64 7.61 -2.91 -0.02 4.61 15 Total: -1.00 -65.83 250.04 4.19 -61.64 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.43 Total: 21.65 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 2.68 Total: -2.59 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -1.59 Total: -73.69 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: 0.64 Total: -46.40 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -65.83 4.19 -61.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000032398.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.974 kcal (2) G-P(sol) polarization free energy of solvation -65.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds