Wall clock time and date at job start Sun Mar 29 2020 22:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30598 * 1 3 3 Si 1.86804 * 119.99690 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00022 * 3 2 1 5 5 H 1.48504 * 109.47059 * 30.00374 * 3 2 1 6 6 H 1.48505 * 109.46682 * 149.99841 * 3 2 1 7 7 C 1.40223 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.40922 * 119.99713 * 0.02562 * 7 2 1 10 10 O 1.21937 * 120.00307 * 0.02562 * 9 7 2 11 11 N 1.34783 * 119.99570 * 179.97438 * 9 7 2 12 12 N 1.40107 * 119.99734 * 180.02562 * 11 9 7 13 13 C 1.30554 * 119.99666 * 180.02562 * 12 11 9 14 14 C 1.46907 * 119.99589 * 179.97438 * 13 12 11 15 15 C 1.40079 * 120.20081 * 179.97438 * 14 13 12 16 16 C 1.37735 * 119.83735 * 180.02562 * 15 14 13 17 17 C 1.38585 * 120.25481 * 359.97438 * 16 15 14 18 18 C 1.38348 * 120.41649 * 0.02562 * 17 16 15 19 19 C 1.38141 * 120.15417 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.12840 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00157 * 0.02562 * 1 2 3 22 22 H 0.96993 * 120.00319 * 359.97438 * 11 9 7 23 23 H 1.07995 * 119.99865 * 359.97438 * 13 12 11 24 24 H 1.07997 * 120.08065 * 0.04674 * 15 14 13 25 25 H 1.08001 * 119.87376 * 180.02562 * 16 15 14 26 26 H 1.08005 * 119.79033 * 179.74651 * 17 16 15 27 27 H 1.07998 * 119.92039 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.4874 2.0466 -1.4001 5 1 1.4373 2.6527 0.7001 6 1 3.5375 1.4402 0.7001 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2142 -0.0010 9 6 1.3025 -2.4347 -0.0016 10 8 0.0831 -2.4348 -0.0026 11 7 1.9765 -3.6020 -0.0027 12 7 1.2759 -4.8153 -0.0043 13 6 1.9288 -5.9459 -0.0048 14 6 1.1942 -7.2182 -0.0060 15 6 1.8904 -8.4337 -0.0070 16 6 1.1941 -9.6221 -0.0086 17 6 -0.1917 -9.6195 -0.0086 18 6 -0.8899 -8.4251 -0.0076 19 6 -0.2088 -7.2233 -0.0070 20 9 -0.8911 -6.0572 -0.0065 21 1 -0.4850 0.8400 -0.0004 22 1 2.9464 -3.6020 -0.0031 23 1 3.0087 -5.9458 -0.0044 24 1 2.9703 -8.4390 -0.0063 25 1 1.7303 -10.5597 -0.0091 26 1 -0.7301 -10.5558 -0.0140 27 1 -1.9698 -8.4324 -0.0080 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000243790.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:00 Heat of formation + Delta-G solvation = -12.921644 kcal Electronic energy + Delta-G solvation = -15396.779795 eV Core-core repulsion = 12456.327770 eV Total energy + Delta-G solvation = -2940.452025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.24452 -38.73816 -37.56399 -35.23103 -32.71802 -31.90655 -30.52142 -29.26804 -26.56104 -23.61499 -22.54347 -20.74797 -19.73945 -17.74866 -17.02438 -16.57802 -15.73142 -15.45394 -15.06491 -14.98919 -14.21654 -13.98195 -13.28579 -13.23433 -12.77264 -12.63915 -12.26450 -11.75549 -11.38974 -11.35574 -11.02973 -10.92053 -10.64641 -10.37843 -9.46954 -9.19065 -8.90846 -8.59481 -7.75269 -7.30314 -6.39123 -4.94605 0.98101 1.34448 2.81435 3.05959 3.10758 3.15096 3.67980 3.88146 4.08111 4.45421 4.50102 4.86341 4.92744 5.08660 5.25108 5.41316 5.74607 5.76436 5.96773 6.10755 6.31469 6.34734 6.44032 6.68927 7.03985 7.21121 7.81752 7.98588 8.64403 8.76525 9.28539 10.39966 10.64864 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.066861 B = 0.004960 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.676866 B = 5643.587619 C = 6052.422142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.556 3.444 10 O -0.547 6.547 11 N -0.586 5.586 12 N -0.169 5.169 13 C 0.001 3.999 14 C -0.054 4.054 15 C -0.082 4.082 16 C -0.137 4.137 17 C -0.098 4.098 18 C -0.161 4.161 19 C 0.122 3.878 20 F -0.108 7.108 21 H 0.275 0.725 22 H 0.369 0.631 23 H 0.112 0.888 24 H 0.132 0.868 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -14.999 -0.019 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.364 3.636 10 O -0.426 6.426 11 N -0.332 5.332 12 N 0.020 4.980 13 C -0.207 4.207 14 C -0.057 4.057 15 C -0.103 4.103 16 C -0.156 4.156 17 C -0.117 4.117 18 C -0.180 4.180 19 C 0.100 3.900 20 F -0.085 7.085 21 H 0.086 0.914 22 H 0.204 0.796 23 H 0.129 0.871 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.738 -14.156 -0.014 14.419 hybrid contribution 1.766 0.722 -0.008 1.908 sum 4.504 -13.435 -0.022 14.170 Atomic orbital electron populations 1.70012 1.07362 1.28084 1.31687 1.25782 0.94692 1.00698 0.92477 0.86202 0.80084 0.80449 0.79097 1.19419 1.20113 1.18649 1.19788 0.94410 0.89508 1.53581 0.91056 1.16908 0.87924 0.80309 0.78479 1.90733 1.13377 1.85118 1.53362 1.48215 1.07441 1.01888 1.75628 1.75017 1.27525 0.92945 1.02482 1.23824 0.96772 0.90444 1.09704 1.18676 0.91037 0.92652 1.03346 1.21075 0.99915 0.90403 0.98886 1.20993 0.94195 0.97873 1.02502 1.21036 0.94231 0.97202 0.99214 1.21120 1.00873 0.91254 1.04731 1.18059 0.89488 0.82219 1.00223 1.91693 1.78884 1.45363 1.92608 0.91433 0.79576 0.87086 0.84996 0.85548 0.85482 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -22.15 11.71 55.56 0.65 -21.50 15 2 C 0.09 2.40 5.50 -17.33 -0.10 2.30 15 3 Si 0.92 19.56 29.56 -169.99 -5.02 14.54 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 7 C -0.54 -15.07 9.27 -37.82 -0.35 -15.42 15 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 15 9 C 0.56 16.59 7.66 -15.24 -0.12 16.48 15 10 O -0.55 -18.83 15.20 4.98 0.08 -18.76 15 11 N -0.59 -14.49 6.26 28.97 0.18 -14.30 15 12 N -0.17 -4.01 9.12 32.15 0.29 -3.72 15 13 C 0.00 0.01 10.76 -14.59 -0.16 -0.14 15 14 C -0.05 -0.86 5.88 -104.92 -0.62 -1.48 15 15 C -0.08 -0.96 9.80 -39.08 -0.38 -1.34 15 16 C -0.14 -1.37 10.03 -39.64 -0.40 -1.77 15 17 C -0.10 -1.02 10.04 -39.41 -0.40 -1.42 15 18 C -0.16 -2.14 10.01 -39.58 -0.40 -2.53 15 19 C 0.12 2.11 7.29 -38.84 -0.28 1.83 15 20 F -0.11 -2.36 15.36 2.25 0.03 -2.33 15 21 H 0.27 7.30 8.29 -40.82 -0.34 6.96 15 22 H 0.37 7.57 8.61 -182.60 -1.57 6.00 15 23 H 0.11 1.62 8.03 -52.49 -0.42 1.20 15 24 H 0.13 1.17 8.06 -52.49 -0.42 0.75 15 25 H 0.13 0.87 8.06 -52.49 -0.42 0.45 15 26 H 0.13 0.94 8.06 -52.48 -0.42 0.52 15 27 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 LS Contribution 259.79 15.07 3.92 3.92 Total: -1.00 -36.50 259.79 -6.30 -42.80 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -3.23 Total: 2.85 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.19 Total: -3.50 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 1.13 Total: -39.53 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.08 Total: -18.76 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.03 Total: -2.33 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -36.50 -6.30 -42.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000243790.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.877 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds