Wall clock time and date at job start Sun Mar 29 2020 22:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30598 * 1 3 3 Si 1.86804 * 119.99690 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00022 * 3 2 1 5 5 H 1.48504 * 109.47059 * 30.00374 * 3 2 1 6 6 H 1.48505 * 109.46682 * 149.99841 * 3 2 1 7 7 C 1.40223 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.40922 * 119.99713 * 0.02562 * 7 2 1 10 10 O 1.21937 * 120.00307 * 0.02562 * 9 7 2 11 11 N 1.34783 * 119.99570 * 179.97438 * 9 7 2 12 12 N 1.40107 * 119.99734 * 180.02562 * 11 9 7 13 13 C 1.30554 * 119.99666 * 180.02562 * 12 11 9 14 14 C 1.46907 * 119.99589 * 179.97438 * 13 12 11 15 15 C 1.40079 * 120.20081 * 179.97438 * 14 13 12 16 16 C 1.37735 * 119.83735 * 180.02562 * 15 14 13 17 17 C 1.38585 * 120.25481 * 359.97438 * 16 15 14 18 18 C 1.38348 * 120.41649 * 0.02562 * 17 16 15 19 19 C 1.38141 * 120.15417 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.12840 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00157 * 0.02562 * 1 2 3 22 22 H 0.96993 * 120.00319 * 359.97438 * 11 9 7 23 23 H 1.07995 * 119.99865 * 359.97438 * 13 12 11 24 24 H 1.07997 * 120.08065 * 0.04674 * 15 14 13 25 25 H 1.08001 * 119.87376 * 180.02562 * 16 15 14 26 26 H 1.08005 * 119.79033 * 179.74651 * 17 16 15 27 27 H 1.07998 * 119.92039 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.4874 2.0466 -1.4001 5 1 1.4373 2.6527 0.7001 6 1 3.5375 1.4402 0.7001 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2142 -0.0010 9 6 1.3025 -2.4347 -0.0016 10 8 0.0831 -2.4348 -0.0026 11 7 1.9765 -3.6020 -0.0027 12 7 1.2759 -4.8153 -0.0043 13 6 1.9288 -5.9459 -0.0048 14 6 1.1942 -7.2182 -0.0060 15 6 1.8904 -8.4337 -0.0070 16 6 1.1941 -9.6221 -0.0086 17 6 -0.1917 -9.6195 -0.0086 18 6 -0.8899 -8.4251 -0.0076 19 6 -0.2088 -7.2233 -0.0070 20 9 -0.8911 -6.0572 -0.0065 21 1 -0.4850 0.8400 -0.0004 22 1 2.9464 -3.6020 -0.0031 23 1 3.0087 -5.9458 -0.0044 24 1 2.9703 -8.4390 -0.0063 25 1 1.7303 -10.5597 -0.0091 26 1 -0.7301 -10.5558 -0.0140 27 1 -1.9698 -8.4324 -0.0080 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000243790.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:59 Heat of formation + Delta-G solvation = -40.520223 kcal Electronic energy + Delta-G solvation = -15397.976560 eV Core-core repulsion = 12456.327770 eV Total energy + Delta-G solvation = -2941.648789 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.070 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.68924 -39.89382 -39.46735 -37.00584 -34.77281 -33.50130 -31.61893 -30.76607 -28.53160 -24.97835 -23.60258 -22.38928 -21.42283 -19.57729 -18.30094 -18.05935 -17.66291 -16.76140 -16.48034 -16.34360 -15.87638 -15.19959 -15.12249 -14.72601 -14.42159 -13.96865 -13.63388 -13.31952 -12.94736 -12.78771 -12.62380 -12.59931 -12.07033 -12.03483 -11.03502 -10.96618 -10.40525 -10.01692 -9.71132 -8.97830 -8.44729 -7.12672 -0.16868 0.33647 1.35633 1.37173 1.53128 1.56880 2.02874 2.32265 2.39931 2.83132 3.40982 3.61212 3.71854 3.86956 4.14700 4.33171 4.42919 4.54297 4.91410 5.03145 5.15570 5.24197 5.31411 5.45429 5.50675 5.76504 5.98443 6.02156 6.64709 6.90247 7.41566 8.39391 8.56183 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.066861 B = 0.004960 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.676866 B = 5643.587619 C = 6052.422142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.027 3.973 3 Si 1.014 2.986 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.243 1.243 7 C -0.561 4.561 8 H 0.098 0.902 9 C 0.541 3.459 10 O -0.615 6.615 11 N -0.594 5.594 12 N -0.257 5.257 13 C 0.052 3.948 14 C -0.099 4.099 15 C -0.061 4.061 16 C -0.125 4.125 17 C -0.075 4.075 18 C -0.171 4.171 19 C 0.077 3.923 20 F -0.151 7.151 21 H 0.282 0.718 22 H 0.384 0.616 23 H 0.151 0.849 24 H 0.169 0.831 25 H 0.175 0.825 26 H 0.170 0.830 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.483 -17.774 -0.015 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.192 4.192 3 Si 0.831 3.169 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.166 1.166 7 C -0.597 4.597 8 H 0.116 0.884 9 C 0.351 3.649 10 O -0.500 6.500 11 N -0.340 5.340 12 N -0.064 5.064 13 C -0.157 4.157 14 C -0.102 4.102 15 C -0.081 4.081 16 C -0.142 4.142 17 C -0.094 4.094 18 C -0.190 4.190 19 C 0.055 3.945 20 F -0.129 7.129 21 H 0.092 0.908 22 H 0.223 0.777 23 H 0.168 0.832 24 H 0.187 0.813 25 H 0.193 0.807 26 H 0.187 0.813 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.594 -16.994 -0.010 17.891 hybrid contribution 0.926 1.035 -0.011 1.389 sum 6.520 -15.959 -0.022 17.239 Atomic orbital electron populations 1.70197 1.10133 1.29852 1.32942 1.27245 0.95577 1.05575 0.90771 0.84797 0.78686 0.73621 0.79782 1.18157 1.19395 1.16619 1.20369 0.95794 0.89808 1.53721 0.88419 1.17351 0.87429 0.82281 0.77882 1.90662 1.15995 1.86720 1.56635 1.47380 1.07740 1.01830 1.77055 1.75147 1.28824 0.93590 1.08853 1.24685 0.98965 0.89961 1.02104 1.18962 0.90734 0.93286 1.07197 1.21553 1.01719 0.88995 0.95840 1.21606 0.94069 0.99009 0.99537 1.21622 0.94993 0.97340 0.95408 1.21380 1.01682 0.90987 1.04916 1.18770 0.90686 0.82099 1.02912 1.91588 1.79877 1.48063 1.93419 0.90799 0.77747 0.83192 0.81341 0.80733 0.81287 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -50.38 11.71 21.87 0.26 -50.12 15 2 C 0.03 1.50 5.50 85.36 0.47 1.97 15 3 Si 1.01 40.44 29.56 68.60 2.03 42.47 15 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 6 H -0.24 -8.86 7.11 99.48 0.71 -8.15 15 7 C -0.56 -32.64 9.27 23.41 0.22 -32.43 15 8 H 0.10 4.92 7.85 -2.91 -0.02 4.90 15 9 C 0.54 34.40 7.66 84.90 0.65 35.05 15 10 O -0.62 -45.79 15.20 -5.11 -0.08 -45.87 15 11 N -0.59 -31.00 6.26 -180.37 -1.13 -32.13 15 12 N -0.26 -12.88 9.12 -52.21 -0.48 -13.36 15 13 C 0.05 1.89 10.76 87.15 0.94 2.83 15 14 C -0.10 -3.05 5.88 -20.06 -0.12 -3.17 15 15 C -0.06 -1.14 9.80 22.60 0.22 -0.92 15 16 C -0.12 -1.71 10.03 22.23 0.22 -1.49 15 17 C -0.07 -1.20 10.04 22.38 0.22 -0.98 15 18 C -0.17 -4.33 10.01 22.27 0.22 -4.10 15 19 C 0.08 2.73 7.29 22.75 0.17 2.89 15 20 F -0.15 -7.25 15.36 44.97 0.69 -6.56 15 21 H 0.28 15.74 8.29 -92.71 -0.77 14.97 15 22 H 0.38 16.32 8.61 -213.32 -1.84 14.49 15 23 H 0.15 4.02 8.03 -2.91 -0.02 3.99 15 24 H 0.17 1.91 8.06 -2.91 -0.02 1.89 15 25 H 0.18 0.91 8.06 -2.91 -0.02 0.89 15 26 H 0.17 1.38 8.06 -2.91 -0.02 1.36 15 27 H 0.14 3.20 8.06 -2.91 -0.02 3.18 15 Total: -1.00 -90.87 259.79 3.88 -86.99 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -0.63 Total: 18.92 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 3.21 Total: -0.34 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -1.35 Total: -95.61 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.08 Total: -45.87 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.69 Total: -6.56 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -90.87 3.88 -86.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000243790.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.472 kcal (2) G-P(sol) polarization free energy of solvation -90.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds