Wall clock time and date at job start Sun Mar 29 2020 22:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99946 * 3 2 1 5 5 H 1.48497 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47137 * 120.00428 * 3 2 1 7 7 C 1.40227 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99530 * 179.97438 * 7 2 1 9 9 C 1.41040 * 120.00119 * 359.97438 * 7 2 1 10 10 O 1.21926 * 119.99936 * 0.02562 * 9 7 2 11 11 N 1.34768 * 120.00232 * 179.97438 * 9 7 2 12 12 N 1.40098 * 120.00332 * 179.97438 * 11 9 7 13 13 C 1.30447 * 120.00454 * 179.97438 * 12 11 9 14 14 C 1.47051 * 120.00409 * 180.02562 * 13 12 11 15 15 C 1.40048 * 120.16493 * 0.23910 * 14 13 12 16 16 C 1.37815 * 119.85874 * 180.20980 * 15 14 13 17 17 C 1.38452 * 120.21368 * 359.80622 * 16 15 14 18 18 C 1.38694 * 120.34219 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.93116 * 180.02562 * 18 17 16 20 20 C 1.38069 * 120.12915 * 359.97424 * 18 17 16 21 21 H 0.97005 * 120.00147 * 359.97438 * 1 2 3 22 22 H 0.97005 * 120.00347 * 0.02562 * 11 9 7 23 23 H 1.08006 * 119.99825 * 0.02562 * 13 12 11 24 24 H 1.07994 * 120.07279 * 0.02562 * 15 14 13 25 25 H 1.08003 * 119.89361 * 179.79044 * 16 15 14 26 26 H 1.08000 * 119.83468 * 179.97438 * 17 16 15 27 27 H 1.08002 * 120.10112 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 3.0936 1.6965 -1.2125 5 1 1.2748 2.7465 0.0006 6 1 3.0936 1.6965 1.2124 7 6 2.0070 -1.2144 -0.0005 8 1 3.0871 -1.2143 -0.0010 9 6 1.3019 -2.4359 -0.0005 10 8 0.0826 -2.4359 -0.0005 11 7 1.9757 -3.6030 -0.0016 12 7 1.2753 -4.8163 -0.0010 13 6 1.9275 -5.9460 -0.0026 14 6 1.1923 -7.2196 -0.0026 15 6 -0.2081 -7.2237 -0.0060 16 6 -0.8908 -8.4209 -0.0016 17 6 -0.1965 -9.6187 0.0022 18 6 1.1904 -9.6247 0.0010 19 9 1.8594 -10.7984 0.0041 20 6 1.8886 -8.4336 -0.0045 21 1 -0.4850 0.8401 0.0004 22 1 2.9458 -3.6030 -0.0020 23 1 3.0076 -5.9460 -0.0038 24 1 -0.7520 -6.2907 -0.0091 25 1 -1.9708 -8.4247 -0.0008 26 1 -0.7377 -10.5534 0.0060 27 1 2.9686 -8.4388 -0.0050 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000573916.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:26 Heat of formation + Delta-G solvation = -44.164238 kcal Electronic energy + Delta-G solvation = -14986.023840 eV Core-core repulsion = 12044.217034 eV Total energy + Delta-G solvation = -2941.806806 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.070 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.85578 -40.05773 -39.47552 -36.96874 -34.75815 -33.47621 -31.74190 -30.76728 -28.53683 -25.14469 -23.65343 -22.43856 -21.38785 -19.62029 -18.18604 -17.96069 -17.53180 -17.09205 -16.60898 -16.55011 -15.98091 -15.23531 -15.19211 -14.71756 -14.44260 -14.04118 -13.82209 -13.31378 -12.91414 -12.76516 -12.71064 -12.54431 -12.16912 -12.07397 -11.07284 -11.00424 -10.40560 -10.02297 -9.78323 -9.04170 -8.43923 -7.10977 -0.22900 0.25082 1.35608 1.39226 1.50618 1.56192 1.99711 2.31129 2.40145 2.77884 3.27042 3.61839 3.69724 3.83635 4.08955 4.22104 4.36771 4.54442 4.71599 4.96774 5.12256 5.15714 5.19294 5.41178 5.53804 5.77635 5.92018 5.99554 6.66552 6.87827 7.40041 8.39042 8.55645 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.072533 B = 0.004156 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.938218 B = 6734.927693 C = 7111.020381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.029 3.971 3 Si 1.010 2.990 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.561 4.561 8 H 0.097 0.903 9 C 0.543 3.457 10 O -0.614 6.614 11 N -0.592 5.592 12 N -0.253 5.253 13 C 0.060 3.940 14 C -0.022 4.022 15 C -0.117 4.117 16 C -0.090 4.090 17 C -0.140 4.140 18 C 0.085 3.915 19 F -0.142 7.142 20 C -0.127 4.127 21 H 0.282 0.718 22 H 0.386 0.614 23 H 0.144 0.856 24 H 0.113 0.887 25 H 0.158 0.842 26 H 0.162 0.838 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -14.539 -0.006 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.189 4.189 3 Si 0.828 3.172 4 H -0.174 1.174 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.597 4.597 8 H 0.115 0.885 9 C 0.353 3.647 10 O -0.499 6.499 11 N -0.338 5.338 12 N -0.060 5.060 13 C -0.150 4.150 14 C -0.024 4.024 15 C -0.138 4.138 16 C -0.107 4.107 17 C -0.160 4.160 18 C 0.066 3.934 19 F -0.120 7.120 20 C -0.148 4.148 21 H 0.092 0.908 22 H 0.224 0.776 23 H 0.161 0.839 24 H 0.131 0.869 25 H 0.175 0.825 26 H 0.180 0.820 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.554 -13.852 -0.004 14.300 hybrid contribution 1.496 0.327 0.001 1.531 sum 5.050 -13.525 -0.004 14.437 Atomic orbital electron populations 1.70158 1.09966 1.29929 1.32807 1.27163 0.95566 1.05383 0.90823 0.84891 0.78132 0.73595 0.80606 1.17448 1.19563 1.17460 1.20365 0.95804 0.89873 1.53690 0.88522 1.17295 0.87397 0.82170 0.77829 1.90646 1.15827 1.86697 1.56754 1.47357 1.07893 1.01648 1.76920 1.74775 1.29146 0.93445 1.08626 1.24546 0.98682 0.89920 1.01847 1.18332 0.92871 0.90413 1.00791 1.21631 0.93928 0.99305 0.98906 1.21199 1.01604 0.90342 0.97589 1.21565 0.92027 1.00558 1.01856 1.17582 0.90728 0.80836 1.04245 1.91495 1.80793 1.45595 1.94162 1.21281 1.01821 0.89334 1.02371 0.90761 0.77576 0.83852 0.86914 0.82482 0.81992 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.16 11.71 21.87 0.26 -47.90 15 2 C 0.03 1.59 5.50 85.36 0.47 2.06 15 3 Si 1.01 38.96 29.56 68.60 2.03 40.99 15 4 H -0.25 -9.02 7.11 99.48 0.71 -8.32 15 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 15 6 H -0.25 -9.03 7.11 99.48 0.71 -8.32 15 7 C -0.56 -31.24 9.28 23.44 0.22 -31.02 15 8 H 0.10 4.66 7.85 -2.91 -0.02 4.64 15 9 C 0.54 32.57 7.67 84.93 0.65 33.22 15 10 O -0.61 -42.94 15.21 -5.08 -0.08 -43.01 15 11 N -0.59 -28.67 6.26 -180.32 -1.13 -29.80 15 12 N -0.25 -11.40 10.18 -52.15 -0.53 -11.94 15 13 C 0.06 1.97 10.76 87.21 0.94 2.90 15 14 C -0.02 -0.62 5.87 -20.11 -0.12 -0.74 15 15 C -0.12 -3.49 9.59 22.61 0.22 -3.27 15 16 C -0.09 -1.97 10.03 22.22 0.22 -1.75 15 17 C -0.14 -2.70 10.02 22.43 0.22 -2.48 15 18 C 0.09 1.83 7.29 22.34 0.16 1.99 15 19 F -0.14 -3.02 17.26 44.97 0.78 -2.25 15 20 C -0.13 -2.84 9.78 22.65 0.22 -2.62 15 21 H 0.28 15.17 8.29 -92.70 -0.77 14.40 15 22 H 0.39 15.27 8.61 -213.32 -1.84 13.43 15 23 H 0.14 3.60 8.03 -2.91 -0.02 3.58 15 24 H 0.11 4.07 7.55 -2.91 -0.02 4.05 15 25 H 0.16 2.64 8.06 -2.91 -0.02 2.61 15 26 H 0.16 2.14 8.06 -2.91 -0.02 2.12 15 27 H 0.16 2.74 8.06 -2.91 -0.02 2.71 15 Total: -1.00 -77.96 261.80 3.91 -74.05 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.62 Total: 21.55 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 3.21 Total: -1.70 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -1.40 Total: -89.64 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.08 Total: -43.01 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -77.96 3.91 -74.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000573916.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.889 kcal (2) G-P(sol) polarization free energy of solvation -77.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds