Wall clock time and date at job start Sun Mar 29 2020 22:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35725 * 116.99922 * 2 1 4 4 C 1.39031 * 119.92787 * 359.72090 * 3 2 1 5 5 C 1.37657 * 120.14676 * 179.72232 * 4 3 2 6 6 C 1.40005 * 119.99633 * 0.55707 * 5 4 3 7 7 C 1.47562 * 120.06939 * 179.74685 * 6 5 4 8 8 O 1.21836 * 120.00192 * 179.97438 * 7 6 5 9 9 C 1.41687 * 119.99659 * 359.97376 * 7 6 5 10 10 H 1.07994 * 120.00503 * 0.02562 * 9 7 6 11 11 C 1.40361 * 119.99907 * 180.02562 * 9 7 6 12 12 N 1.30528 * 119.99574 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00323 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46673 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47380 * 119.99795 * 13 11 9 16 16 H 1.48497 * 109.47071 * 240.00149 * 13 11 9 17 17 C 1.39895 * 119.86340 * 359.72044 * 6 5 4 18 18 C 1.38013 * 119.85278 * 0.02562 * 17 6 5 19 19 O 1.35964 * 120.00468 * 179.97438 * 18 17 6 20 20 C 1.42901 * 116.99695 * 0.02562 * 19 18 17 21 21 H 1.08998 * 109.47043 * 59.99854 * 1 2 3 22 22 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47144 * 300.00255 * 1 2 3 24 24 H 1.08001 * 119.92711 * 0.02562 * 4 3 2 25 25 H 1.07999 * 120.00094 * 180.28293 * 5 4 3 26 26 H 0.97004 * 119.99508 * 179.97438 * 12 11 9 27 27 H 1.08001 * 120.07269 * 180.02562 * 17 6 5 28 28 H 1.09005 * 109.47084 * 60.00567 * 20 19 18 29 29 H 1.08999 * 109.47018 * 180.02562 * 20 19 18 30 30 H 1.08997 * 109.47089 * 300.00211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2865 2.3744 -0.0059 5 6 1.9067 3.6033 -0.0001 6 6 3.3045 3.6819 -0.0001 7 6 3.9710 4.9984 0.0004 8 8 5.1876 5.0653 0.0008 9 6 3.1962 6.1846 0.0003 10 1 2.1179 6.1254 0.0003 11 6 3.8301 7.4369 0.0003 12 7 5.1335 7.5086 0.0008 13 14 2.8087 9.0009 0.0009 14 1 1.3659 8.6497 0.0008 15 1 3.1246 9.7980 1.2133 16 1 3.1237 9.7983 -1.2116 17 6 4.0681 2.5097 -0.0001 18 6 3.4401 1.2807 -0.0005 19 8 4.1792 0.1395 -0.0010 20 6 5.6006 0.2872 -0.0004 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2081 2.3151 -0.0100 25 1 1.3150 4.5068 -0.0001 26 1 5.5716 8.3741 0.0003 27 1 5.1466 2.5664 0.0003 28 1 5.9086 0.8352 0.8901 29 1 6.0682 -0.6974 -0.0013 30 1 5.9092 0.8364 -0.8899 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002579780.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:34 Heat of formation + Delta-G solvation = -90.143092 kcal Electronic energy + Delta-G solvation = -16216.058821 eV Core-core repulsion = 13363.425777 eV Total energy + Delta-G solvation = -2852.633045 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00312 -38.07874 -37.21422 -35.35286 -32.73067 -30.02498 -29.63117 -27.69548 -26.97394 -25.98513 -22.59222 -21.47986 -19.80481 -18.03517 -17.15970 -16.12988 -15.72857 -15.70874 -15.26385 -14.93381 -14.30701 -13.99936 -13.89554 -13.19405 -12.53548 -12.50590 -11.97711 -11.83495 -11.75454 -11.37004 -11.13121 -10.97876 -10.87196 -10.82982 -10.36187 -10.20028 -10.04395 -9.01974 -8.11215 -7.53291 -7.21418 -6.35412 -4.95178 1.77209 1.98813 3.01092 3.10365 3.14718 3.59463 3.68605 3.97128 3.97330 4.59534 5.16282 5.29564 5.30862 5.43040 5.52790 5.56414 5.62037 5.76451 5.76687 5.83562 5.99619 6.11594 6.31262 6.77500 6.90696 7.20393 7.28660 7.31062 7.43453 7.99003 8.03853 8.74367 8.79356 10.26283 10.48216 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.006893 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.183174 B = 4061.258948 C = 4923.995243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.082 3.918 4 C -0.185 4.185 5 C -0.091 4.091 6 C -0.099 4.099 7 C 0.387 3.613 8 O -0.544 6.544 9 C -0.514 4.514 10 H 0.076 0.924 11 C 0.079 3.921 12 N -0.734 5.734 13 Si 0.907 3.093 14 H -0.260 1.260 15 H -0.273 1.273 16 H -0.273 1.273 17 C -0.144 4.144 18 C 0.082 3.918 19 O -0.315 6.315 20 C 0.028 3.972 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.051 0.949 24 H 0.128 0.872 25 H 0.135 0.865 26 H 0.274 0.726 27 H 0.139 0.861 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -8.987 -0.004 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.037 3.963 4 C -0.204 4.204 5 C -0.109 4.109 6 C -0.100 4.100 7 C 0.283 3.717 8 O -0.434 6.434 9 C -0.545 4.545 10 H 0.094 0.906 11 C -0.145 4.145 12 N -0.362 5.362 13 Si 0.731 3.269 14 H -0.183 1.183 15 H -0.198 1.198 16 H -0.198 1.198 17 C -0.163 4.163 18 C 0.037 3.963 19 O -0.230 6.230 20 C -0.068 4.068 21 H 0.070 0.930 22 H 0.111 0.889 23 H 0.070 0.930 24 H 0.145 0.855 25 H 0.152 0.848 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.163 -9.292 -0.003 11.150 hybrid contribution -0.678 1.056 0.000 1.255 sum -6.842 -8.236 -0.004 10.707 Atomic orbital electron populations 1.22961 0.79446 1.03130 1.01079 1.86042 1.20324 1.26701 1.89576 1.18358 0.88920 0.84713 1.04263 1.20988 0.99179 0.91753 1.08496 1.21299 0.94485 0.96631 0.98514 1.21667 0.93553 0.97548 0.97270 1.18055 0.88782 0.85425 0.79401 1.90503 1.15363 1.88156 1.49347 1.20961 0.95117 0.91462 1.46939 0.90610 1.26028 0.94821 1.00918 0.92720 1.69970 1.09470 1.26184 1.30590 0.86306 0.80996 0.81030 0.78569 1.18323 1.19799 1.19804 1.21330 1.01053 0.90147 1.03738 1.18170 0.87977 0.85885 1.04227 1.86058 1.18447 1.28686 1.89783 1.22993 0.79055 1.02973 1.01732 0.93005 0.88884 0.93011 0.85460 0.84767 0.91492 0.84334 0.92704 0.88833 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.29 10.27 -33.42 -0.34 -5.63 16 3 C 0.08 1.55 6.72 -38.75 -0.26 1.29 16 4 C -0.19 -3.28 9.01 -39.50 -0.36 -3.63 16 5 C -0.09 -1.85 9.43 -39.13 -0.37 -2.22 16 6 C -0.10 -2.37 5.89 -104.81 -0.62 -2.98 16 7 C 0.39 10.97 6.90 -34.47 -0.24 10.74 16 8 O -0.54 -17.23 14.88 5.07 0.08 -17.16 16 9 C -0.51 -13.98 8.85 -37.47 -0.33 -14.31 16 10 H 0.08 1.86 6.01 -52.49 -0.32 1.54 16 11 C 0.08 2.09 5.50 -17.31 -0.10 1.99 16 12 N -0.73 -20.92 11.73 55.57 0.65 -20.27 16 13 Si 0.91 18.97 29.56 -169.99 -5.03 13.94 16 14 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 C -0.14 -3.18 8.58 -39.04 -0.33 -3.52 16 18 C 0.08 1.66 6.70 -39.13 -0.26 1.40 16 19 O -0.32 -5.87 10.28 -34.17 -0.35 -6.22 16 20 C 0.03 0.41 9.81 101.05 0.99 1.40 16 21 H 0.05 0.54 7.64 -51.93 -0.40 0.15 16 22 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 24 H 0.13 1.78 6.28 -52.49 -0.33 1.45 16 25 H 0.13 2.58 6.19 -52.49 -0.32 2.26 16 26 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 27 H 0.14 3.07 5.87 -52.49 -0.31 2.76 16 28 H 0.05 0.79 7.66 -51.93 -0.40 0.40 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.79 7.66 -51.93 -0.40 0.40 16 LS Contribution 264.77 15.07 3.99 3.99 Total: -1.00 -33.57 264.77 -4.73 -38.30 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -2.85 Total: 1.56 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.88 Total: -8.52 kcal Atomic # 7 Polarization: -20.92 SS G_CDS: 0.65 Total: -20.27 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.62 Total: -29.01 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.57 -4.73 -38.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002579780.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.845 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds