Wall clock time and date at job start Sun Mar 29 2020 22:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35725 * 116.99922 * 2 1 4 4 C 1.39031 * 119.92787 * 359.72090 * 3 2 1 5 5 C 1.37657 * 120.14676 * 179.72232 * 4 3 2 6 6 C 1.40005 * 119.99633 * 0.55707 * 5 4 3 7 7 C 1.47562 * 120.06939 * 179.74685 * 6 5 4 8 8 O 1.21836 * 120.00192 * 179.97438 * 7 6 5 9 9 C 1.41687 * 119.99659 * 359.97376 * 7 6 5 10 10 H 1.07994 * 120.00503 * 0.02562 * 9 7 6 11 11 C 1.40361 * 119.99907 * 180.02562 * 9 7 6 12 12 N 1.30528 * 119.99574 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00323 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46673 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47380 * 119.99795 * 13 11 9 16 16 H 1.48497 * 109.47071 * 240.00149 * 13 11 9 17 17 C 1.39895 * 119.86340 * 359.72044 * 6 5 4 18 18 C 1.38013 * 119.85278 * 0.02562 * 17 6 5 19 19 O 1.35964 * 120.00468 * 179.97438 * 18 17 6 20 20 C 1.42901 * 116.99695 * 0.02562 * 19 18 17 21 21 H 1.08998 * 109.47043 * 59.99854 * 1 2 3 22 22 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47144 * 300.00255 * 1 2 3 24 24 H 1.08001 * 119.92711 * 0.02562 * 4 3 2 25 25 H 1.07999 * 120.00094 * 180.28293 * 5 4 3 26 26 H 0.97004 * 119.99508 * 179.97438 * 12 11 9 27 27 H 1.08001 * 120.07269 * 180.02562 * 17 6 5 28 28 H 1.09005 * 109.47084 * 60.00567 * 20 19 18 29 29 H 1.08999 * 109.47018 * 180.02562 * 20 19 18 30 30 H 1.08997 * 109.47089 * 300.00211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2865 2.3744 -0.0059 5 6 1.9067 3.6033 -0.0001 6 6 3.3045 3.6819 -0.0001 7 6 3.9710 4.9984 0.0004 8 8 5.1876 5.0653 0.0008 9 6 3.1962 6.1846 0.0003 10 1 2.1179 6.1254 0.0003 11 6 3.8301 7.4369 0.0003 12 7 5.1335 7.5086 0.0008 13 14 2.8087 9.0009 0.0009 14 1 1.3659 8.6497 0.0008 15 1 3.1246 9.7980 1.2133 16 1 3.1237 9.7983 -1.2116 17 6 4.0681 2.5097 -0.0001 18 6 3.4401 1.2807 -0.0005 19 8 4.1792 0.1395 -0.0010 20 6 5.6006 0.2872 -0.0004 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2081 2.3151 -0.0100 25 1 1.3150 4.5068 -0.0001 26 1 5.5716 8.3741 0.0003 27 1 5.1466 2.5664 0.0003 28 1 5.9086 0.8352 0.8901 29 1 6.0682 -0.6974 -0.0013 30 1 5.9092 0.8364 -0.8899 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002579780.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:34 Heat of formation + Delta-G solvation = -113.259377 kcal Electronic energy + Delta-G solvation = -16217.061219 eV Core-core repulsion = 13363.425777 eV Total energy + Delta-G solvation = -2853.635442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46780 -39.42491 -39.07619 -37.07706 -34.79928 -31.57260 -31.22951 -29.35255 -28.07714 -27.61579 -24.28549 -22.98223 -21.59534 -19.50689 -18.83588 -17.77848 -17.40523 -17.01419 -16.98969 -16.14033 -15.73966 -15.59359 -15.35846 -15.00861 -14.40503 -13.95552 -13.49996 -13.34965 -13.21989 -12.97108 -12.78213 -12.64149 -12.21669 -12.08366 -11.99748 -11.77763 -11.73187 -11.00899 -9.68764 -9.64579 -8.76376 -8.36349 -7.08910 0.12541 0.42333 1.38088 1.39603 1.58401 2.17301 2.21135 2.31895 2.37770 2.79291 3.71517 3.87385 4.00090 4.10150 4.31816 4.33938 4.41665 4.48686 4.51202 4.52858 4.66103 4.75935 4.79463 5.13867 5.19670 5.33732 5.67252 5.69515 5.96987 6.09172 6.61238 6.68435 6.77658 8.22790 8.47464 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.006893 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.183174 B = 4061.258948 C = 4923.995243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.094 3.906 4 C -0.170 4.170 5 C -0.087 4.087 6 C -0.141 4.141 7 C 0.362 3.638 8 O -0.600 6.600 9 C -0.538 4.538 10 H 0.100 0.900 11 C 0.021 3.979 12 N -0.787 5.787 13 Si 0.998 3.002 14 H -0.240 1.240 15 H -0.265 1.265 16 H -0.265 1.265 17 C -0.155 4.155 18 C 0.072 3.928 19 O -0.323 6.323 20 C 0.022 3.978 21 H 0.067 0.933 22 H 0.121 0.879 23 H 0.067 0.933 24 H 0.174 0.826 25 H 0.145 0.855 26 H 0.282 0.718 27 H 0.122 0.878 28 H 0.049 0.951 29 H 0.133 0.867 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 -9.483 -0.007 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.048 3.952 4 C -0.188 4.188 5 C -0.105 4.105 6 C -0.142 4.142 7 C 0.263 3.737 8 O -0.495 6.495 9 C -0.568 4.568 10 H 0.118 0.882 11 C -0.198 4.198 12 N -0.416 5.416 13 Si 0.816 3.184 14 H -0.162 1.162 15 H -0.190 1.190 16 H -0.190 1.190 17 C -0.174 4.174 18 C 0.027 3.973 19 O -0.237 6.237 20 C -0.072 4.072 21 H 0.086 0.914 22 H 0.140 0.860 23 H 0.085 0.915 24 H 0.192 0.808 25 H 0.163 0.837 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.068 0.932 29 H 0.151 0.849 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.486 -9.824 -0.006 13.657 hybrid contribution 0.302 1.006 0.001 1.051 sum -9.185 -8.817 -0.006 12.732 Atomic orbital electron populations 1.23419 0.76257 1.05709 1.02541 1.86046 1.23543 1.25478 1.88896 1.18542 0.88612 0.86033 1.01998 1.21335 1.01263 0.89931 1.06301 1.21387 0.92843 0.98410 0.97850 1.21351 0.95372 0.95929 1.01586 1.18780 0.88500 0.87991 0.78460 1.90441 1.17470 1.89445 1.52142 1.21487 0.96395 0.91964 1.46946 0.88203 1.27342 0.96046 1.05222 0.91181 1.70119 1.12138 1.27876 1.31455 0.84966 0.79542 0.75034 0.78863 1.16241 1.19011 1.19015 1.21190 1.00387 0.90934 1.04862 1.18284 0.89212 0.85484 1.04296 1.86044 1.20090 1.27984 1.89588 1.23249 0.77432 1.05243 1.01284 0.91438 0.86038 0.91453 0.80838 0.83691 0.90711 0.86013 0.93216 0.84904 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.95 10.27 -76.57 -0.79 -10.74 16 3 C 0.09 3.34 6.72 22.81 0.15 3.50 16 4 C -0.17 -5.49 9.01 22.32 0.20 -5.29 16 5 C -0.09 -3.44 9.43 22.56 0.21 -3.23 16 6 C -0.14 -6.97 5.89 -19.99 -0.12 -7.09 16 7 C 0.36 21.59 6.90 25.58 0.18 21.77 16 8 O -0.60 -40.74 14.88 -4.78 -0.07 -40.81 16 9 C -0.54 -29.85 8.85 23.64 0.21 -29.64 16 10 H 0.10 4.84 6.01 -2.91 -0.02 4.82 16 11 C 0.02 1.13 5.50 85.40 0.47 1.60 16 12 N -0.79 -46.62 11.73 21.89 0.26 -46.37 16 13 Si 1.00 38.55 29.56 68.60 2.03 40.58 16 14 H -0.24 -8.42 7.11 99.48 0.71 -7.71 16 15 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 16 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 17 C -0.15 -7.15 8.58 22.62 0.19 -6.96 16 18 C 0.07 2.92 6.70 22.56 0.15 3.07 16 19 O -0.32 -11.87 10.28 -79.24 -0.81 -12.68 16 20 C 0.02 0.66 9.81 113.37 1.11 1.77 16 21 H 0.07 1.06 7.64 -2.39 -0.02 1.05 16 22 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 24 H 0.17 3.93 6.28 -2.91 -0.02 3.91 16 25 H 0.15 5.32 6.19 -2.91 -0.02 5.30 16 26 H 0.28 14.86 8.29 -92.71 -0.77 14.09 16 27 H 0.12 5.87 5.87 -2.91 -0.02 5.85 16 28 H 0.05 1.50 7.66 -2.38 -0.02 1.48 16 29 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.05 1.50 7.66 -2.39 -0.02 1.48 16 Total: -1.00 -77.47 264.77 5.66 -71.81 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.17 Total: 17.32 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.87 Total: -19.12 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.26 Total: -46.37 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -1.67 Total: -64.23 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -77.47 5.66 -71.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002579780.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.447 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds