Wall clock time and date at job start Sun Mar 29 2020 22:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30592 * 1 3 3 Si 1.86806 * 119.99779 * 2 1 4 4 H 1.48495 * 109.47023 * 274.97943 * 3 2 1 5 5 H 1.48504 * 109.47118 * 34.97687 * 3 2 1 6 6 H 1.48502 * 109.47319 * 154.98050 * 3 2 1 7 7 C 1.40216 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99956 * 186.27565 * 7 2 1 9 9 C 1.40891 * 120.00299 * 6.28354 * 7 2 1 10 10 O 1.21946 * 119.99720 * 353.72297 * 9 7 2 11 11 N 1.34775 * 120.00268 * 173.72250 * 9 7 2 12 12 N 1.40101 * 119.99941 * 180.02562 * 11 9 7 13 13 C 1.30560 * 119.99891 * 180.02562 * 12 11 9 14 14 C 1.46924 * 119.99763 * 179.97438 * 13 12 11 15 15 C 1.40109 * 120.15583 * 179.97438 * 14 13 12 16 16 C 1.37709 * 119.84293 * 179.97438 * 15 14 13 17 17 C 1.38790 * 120.15626 * 359.97438 * 16 15 14 18 18 F 1.35097 * 119.84462 * 180.02562 * 17 16 15 19 19 C 1.38800 * 120.31438 * 0.29978 * 17 16 15 20 20 C 1.37707 * 120.16054 * 359.43919 * 19 17 16 21 21 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00147 * 0.02562 * 11 9 7 23 23 H 1.07997 * 120.00049 * 359.97438 * 13 12 11 24 24 H 1.08001 * 120.07798 * 0.02562 * 15 14 13 25 25 H 1.07991 * 119.92394 * 180.02562 * 16 15 14 26 26 H 1.08004 * 119.91737 * 179.72297 * 19 17 16 27 27 H 1.07997 * 120.08199 * 180.29818 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.3821 2.1072 -1.3947 5 1 1.4938 2.6201 0.8026 6 1 3.5861 1.4123 0.5921 7 6 2.0071 -1.2143 0.0005 8 1 3.0823 -1.2170 0.1028 9 6 1.3091 -2.4309 -0.1325 10 8 0.0896 -2.4373 -0.1329 11 7 1.9890 -3.5876 -0.2592 12 7 1.2949 -4.7973 -0.3920 13 6 1.9536 -5.9179 -0.5142 14 6 1.2256 -7.1865 -0.6529 15 6 1.9292 -8.3910 -0.7848 16 6 1.2404 -9.5764 -0.9139 17 6 -0.1475 -9.5799 -0.9129 18 9 -0.8170 -10.7466 -1.0394 19 6 -0.8511 -8.3900 -0.7883 20 6 -0.1755 -7.1977 -0.6531 21 1 -0.4851 0.8400 -0.0004 22 1 2.9590 -3.5826 -0.2584 23 1 3.0336 -5.9123 -0.5134 24 1 3.0092 -8.3898 -0.7845 25 1 1.7813 -10.5055 -1.0153 26 1 -1.9311 -8.3997 -0.7928 27 1 -0.7242 -6.2731 -0.5514 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003184406.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:02 Heat of formation + Delta-G solvation = -45.155110 kcal Electronic energy + Delta-G solvation = -14964.946997 eV Core-core repulsion = 12023.097224 eV Total energy + Delta-G solvation = -2941.849773 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.88386 -40.04055 -39.45895 -36.91281 -34.74905 -33.29185 -32.14958 -30.62612 -28.44823 -24.87669 -23.89807 -22.36556 -21.35171 -19.53140 -18.58547 -18.03812 -17.66423 -16.80601 -16.56576 -16.45326 -15.82358 -15.21593 -15.03972 -14.72405 -14.46454 -14.06252 -13.83227 -13.36335 -13.08216 -12.94469 -12.70044 -12.52784 -12.02364 -11.96809 -11.01770 -11.01480 -10.21852 -10.08285 -10.00497 -8.91386 -8.44633 -7.09762 -0.25400 0.32801 1.34242 1.39447 1.49644 1.58419 2.04255 2.33131 2.41126 2.79620 3.27445 3.62086 3.72626 3.83836 3.96342 4.29262 4.34480 4.56404 4.90044 5.03829 5.07601 5.16431 5.18563 5.33084 5.56338 5.79532 5.91063 6.01645 6.67246 6.92016 7.43656 8.39978 8.57080 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.075837 B = 0.004095 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.122949 B = 6835.595887 C = 7190.479020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.029 3.971 3 Si 1.011 2.989 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.243 1.243 7 C -0.561 4.561 8 H 0.097 0.903 9 C 0.544 3.456 10 O -0.617 6.617 11 N -0.593 5.593 12 N -0.263 5.263 13 C 0.065 3.935 14 C -0.061 4.061 15 C -0.054 4.054 16 C -0.146 4.146 17 C 0.090 3.910 18 F -0.144 7.144 19 C -0.161 4.161 20 C -0.080 4.080 21 H 0.282 0.718 22 H 0.386 0.614 23 H 0.149 0.851 24 H 0.177 0.823 25 H 0.171 0.829 26 H 0.142 0.858 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 -14.720 -1.803 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.190 4.190 3 Si 0.828 3.172 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.166 1.166 7 C -0.598 4.598 8 H 0.115 0.885 9 C 0.353 3.647 10 O -0.502 6.502 11 N -0.339 5.339 12 N -0.071 5.071 13 C -0.144 4.144 14 C -0.063 4.063 15 C -0.074 4.074 16 C -0.164 4.164 17 C 0.070 3.930 18 F -0.123 7.123 19 C -0.180 4.180 20 C -0.101 4.101 21 H 0.092 0.908 22 H 0.224 0.776 23 H 0.166 0.834 24 H 0.194 0.806 25 H 0.188 0.812 26 H 0.160 0.840 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.040 -14.049 -1.729 15.390 hybrid contribution 0.844 0.381 -0.014 0.927 sum 6.884 -13.668 -1.743 15.403 Atomic orbital electron populations 1.70174 1.10039 1.29846 1.32899 1.27178 0.95531 1.05453 0.90804 0.84825 0.78923 0.73982 0.79444 1.18501 1.19448 1.16595 1.20356 0.96315 0.90113 1.52974 0.88480 1.17261 0.87304 0.82232 0.77875 1.90651 1.15924 1.86346 1.57287 1.47299 1.07879 1.02547 1.76143 1.74843 1.29365 0.93614 1.09244 1.24628 0.98815 0.89990 1.01001 1.18772 0.92601 0.91890 1.03032 1.21438 1.01849 0.88711 0.95374 1.21348 0.91319 1.00863 1.02918 1.18124 0.91245 0.80803 1.02819 1.91480 1.81016 1.46431 1.93364 1.21161 1.01565 0.91061 1.04182 1.21309 0.94456 0.97655 0.96651 0.90803 0.77574 0.83385 0.80612 0.81202 0.83970 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.45 11.74 21.86 0.26 -48.19 15 2 C 0.03 1.57 5.49 85.36 0.47 2.04 15 3 Si 1.01 39.05 29.57 68.60 2.03 41.08 15 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 6 H -0.24 -8.55 7.11 99.48 0.71 -7.85 15 7 C -0.56 -31.28 9.26 23.40 0.22 -31.06 15 8 H 0.10 4.69 7.86 -2.91 -0.02 4.67 15 9 C 0.54 32.64 7.65 84.89 0.65 33.29 15 10 O -0.62 -43.38 15.23 -5.14 -0.08 -43.46 15 11 N -0.59 -28.56 6.26 -180.40 -1.13 -29.69 15 12 N -0.26 -11.82 10.19 -52.19 -0.53 -12.35 15 13 C 0.07 2.06 10.76 87.16 0.94 3.00 15 14 C -0.06 -1.65 5.88 -20.09 -0.12 -1.77 15 15 C -0.05 -0.97 9.80 22.60 0.22 -0.75 15 16 C -0.15 -2.54 10.01 22.28 0.22 -2.32 15 17 C 0.09 2.04 7.31 22.54 0.16 2.20 15 18 F -0.14 -3.30 17.26 44.97 0.78 -2.52 15 19 C -0.16 -4.16 10.01 22.28 0.22 -3.94 15 20 C -0.08 -2.47 9.58 22.60 0.22 -2.26 15 21 H 0.28 15.18 8.29 -92.71 -0.77 14.41 15 22 H 0.39 15.07 8.61 -213.32 -1.84 13.23 15 23 H 0.15 3.39 8.03 -2.91 -0.02 3.36 15 24 H 0.18 1.77 8.06 -2.91 -0.02 1.75 15 25 H 0.17 1.82 8.06 -2.92 -0.02 1.79 15 26 H 0.14 3.30 8.06 -2.91 -0.02 3.28 15 27 H 0.11 4.24 7.55 -2.91 -0.02 4.22 15 Total: -1.00 -79.96 261.83 3.90 -76.06 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.62 Total: 20.63 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 3.20 Total: -1.56 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -1.40 Total: -90.23 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -0.08 Total: -43.46 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -79.96 3.90 -76.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003184406.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.902 kcal (2) G-P(sol) polarization free energy of solvation -79.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds