Wall clock time and date at job start Sun Mar 29 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 119.99977 * 2 1 4 4 S 1.71197 * 119.99927 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99914 * 179.97438 * 3 2 1 6 6 C 1.39143 * 120.00036 * 185.51882 * 5 3 2 7 7 C 1.39514 * 119.82950 * 42.15622 * 6 5 3 8 8 C 1.36362 * 120.16142 * 180.27848 * 7 6 5 9 9 C 1.40878 * 119.83130 * 359.45120 * 8 7 6 10 10 C 1.41140 * 120.15947 * 180.27705 * 9 8 7 11 11 H 1.08007 * 119.99786 * 205.10707 * 10 9 8 12 12 C 1.39885 * 120.00207 * 25.11353 * 10 9 8 13 13 N 1.30883 * 120.00310 * 17.71978 * 12 10 9 14 14 Si 1.86804 * 119.99980 * 197.72316 * 12 10 9 15 15 H 1.48504 * 109.47149 * 94.73588 * 14 12 10 16 16 H 1.48493 * 109.47091 * 214.73889 * 14 12 10 17 17 H 1.48500 * 109.47050 * 334.73573 * 14 12 10 18 18 C 1.40880 * 119.67536 * 0.56557 * 9 8 7 19 19 C 1.36352 * 119.83302 * 359.71067 * 18 9 8 20 20 H 1.08996 * 109.47447 * 60.00392 * 1 2 3 21 21 H 1.09009 * 109.46935 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47510 * 299.99503 * 1 2 3 23 23 H 0.97004 * 120.00224 * 180.02562 * 2 1 3 24 24 H 0.96999 * 120.00240 * 5.52934 * 5 3 2 25 25 H 1.07998 * 119.92168 * 359.97438 * 7 6 5 26 26 H 1.08001 * 120.08468 * 179.72540 * 8 7 6 27 27 H 0.96990 * 120.00073 * 180.02562 * 13 12 10 28 28 H 1.07999 * 120.08295 * 179.69013 * 18 9 8 29 29 H 1.07997 * 119.92098 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 16 1.2828 2.6498 0.0007 5 7 3.4866 1.1672 0.0005 6 6 4.1823 2.3666 0.1164 7 6 3.7519 3.3334 1.0255 8 6 4.4253 4.5136 1.1406 9 6 5.5649 4.7505 0.3469 10 6 6.2705 5.9672 0.4646 11 1 6.8574 6.3335 -0.3648 12 6 6.2097 6.6987 1.6554 13 7 5.8059 6.1212 2.7583 14 14 6.7049 8.4999 1.6715 15 1 5.4974 9.3468 1.4980 16 1 7.3543 8.8231 2.9671 17 1 7.6565 8.7615 0.5619 18 6 5.9931 3.7696 -0.5691 19 6 5.3064 2.5966 -0.6772 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.9500 -0.8401 -0.0004 24 1 3.9716 0.3310 -0.0800 25 1 2.8805 3.1488 1.6361 26 1 4.0884 5.2630 1.8416 27 1 5.7634 6.6285 3.5839 28 1 6.8629 3.9464 -1.1844 29 1 5.6331 1.8438 -1.3793 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018145475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:42 Heat of formation + Delta-G solvation = 41.567654 kcal Electronic energy + Delta-G solvation = -13916.865349 eV Core-core repulsion = 11544.989333 eV Total energy + Delta-G solvation = -2371.876016 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.08617 -37.23182 -34.91406 -33.11125 -29.53717 -29.25907 -26.91982 -24.63218 -23.44020 -21.17129 -20.63738 -18.15548 -17.35226 -17.28599 -15.39245 -15.06623 -14.79215 -14.72791 -13.95123 -13.47873 -12.74261 -12.42879 -12.21433 -12.08211 -11.81161 -11.26384 -11.12669 -10.92613 -10.59613 -10.55311 -9.85135 -9.55377 -9.20564 -9.02261 -7.70844 -7.44330 -7.02865 -6.81301 -6.29846 -4.34548 1.72407 2.47344 2.81542 3.08262 3.11489 3.11820 3.16061 3.28156 3.91858 3.99906 4.61074 5.06215 5.53422 5.69806 5.82714 6.08054 6.26932 6.38268 6.57261 6.98265 7.02620 7.11903 7.21820 7.30567 7.59587 7.67305 7.93818 8.05775 8.19647 8.26999 8.63356 8.85900 8.96587 10.13207 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.048409 B = 0.006057 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.268905 B = 4621.421440 C = 4940.657048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.704 5.704 3 C 0.541 3.459 4 S -0.643 6.643 5 N -0.592 5.592 6 C -0.038 4.038 7 C -0.038 4.038 8 C -0.163 4.163 9 C 0.120 3.880 10 C -0.451 4.451 11 H 0.080 0.920 12 C 0.075 3.925 13 N -0.782 5.782 14 Si 0.910 3.090 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.226 4.226 19 C -0.081 4.081 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.392 0.608 24 H 0.389 0.611 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.283 0.717 28 H 0.096 0.904 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -10.380 -1.919 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.336 5.336 3 C 0.183 3.817 4 S -0.515 6.515 5 N -0.210 5.210 6 C -0.131 4.131 7 C -0.059 4.059 8 C -0.184 4.184 9 C 0.117 3.883 10 C -0.480 4.480 11 H 0.098 0.902 12 C -0.144 4.144 13 N -0.407 5.407 14 Si 0.734 3.266 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.247 4.247 19 C -0.101 4.101 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.227 0.773 24 H 0.225 0.775 25 H 0.127 0.873 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.362 -9.279 -1.648 10.385 hybrid contribution 1.079 -0.866 -0.008 1.383 sum -3.283 -10.145 -1.656 10.790 Atomic orbital electron populations 1.21727 0.76565 1.01727 1.04462 1.44671 1.08651 1.05287 1.75021 1.22436 0.85531 0.91848 0.81893 1.93283 1.66664 1.17481 1.74112 1.41978 1.02318 1.10147 1.66605 1.16882 0.99884 0.88800 1.07488 1.20468 0.96824 0.93538 0.95071 1.20861 0.96173 0.97135 1.04221 1.17716 0.89872 0.91363 0.89346 1.19647 1.25536 1.03857 0.98925 0.90162 1.25969 0.93159 1.00409 0.94898 1.69850 1.33552 1.37409 0.99841 0.86269 0.79660 0.82048 0.78612 1.19131 1.20249 1.18501 1.20468 1.02572 0.94629 1.07001 1.19975 0.95856 0.97315 0.96974 0.90765 0.90893 0.90707 0.77343 0.77494 0.87344 0.86216 0.90650 0.88575 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 10.16 59.85 0.61 1.63 15 2 N -0.70 -8.36 5.72 -68.84 -0.39 -8.76 15 3 C 0.54 9.39 7.73 -86.92 -0.67 8.71 15 4 S -0.64 -14.46 25.05 -107.50 -2.69 -17.16 15 5 N -0.59 -10.18 5.29 -11.28 -0.06 -10.24 15 6 C -0.04 -0.83 5.91 -83.59 -0.49 -1.32 15 7 C -0.04 -0.93 7.77 -39.78 -0.31 -1.24 15 8 C -0.16 -4.37 8.63 -39.26 -0.34 -4.71 15 9 C 0.12 3.20 5.57 -106.80 -0.59 2.61 15 10 C -0.45 -11.86 9.03 -37.86 -0.34 -12.20 15 11 H 0.08 2.02 7.91 -52.48 -0.41 1.60 15 12 C 0.07 1.87 5.13 -17.34 -0.09 1.78 15 13 N -0.78 -20.10 10.98 55.54 0.61 -19.49 15 14 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 15 15 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 16 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 17 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 18 C -0.23 -5.46 9.74 -39.26 -0.38 -5.84 15 19 C -0.08 -1.76 9.90 -39.79 -0.39 -2.15 15 20 H 0.07 0.86 7.99 -51.93 -0.42 0.45 15 21 H 0.07 0.46 8.14 -51.92 -0.42 0.04 15 22 H 0.07 0.88 7.99 -51.93 -0.41 0.46 15 23 H 0.39 3.19 8.85 -40.82 -0.36 2.83 15 24 H 0.39 5.06 8.84 -40.82 -0.36 4.70 15 25 H 0.11 2.72 6.27 -49.80 -0.31 2.41 15 26 H 0.12 3.35 6.19 -52.49 -0.32 3.02 15 27 H 0.28 6.59 8.30 -40.82 -0.34 6.25 15 28 H 0.10 2.16 8.06 -52.49 -0.42 1.73 15 29 H 0.09 1.61 8.06 -52.49 -0.42 1.19 15 LS Contribution 264.12 15.07 3.98 3.98 Total: -1.00 -31.55 264.12 -9.60 -41.15 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.01 Total: 9.67 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.01 Total: -12.74 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.16 Total: -38.48 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: -14.46 SS G_CDS: -2.69 Total: -17.16 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.55 -9.60 -41.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018145475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.717 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds