Wall clock time and date at job start Sun Mar 29 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 119.99977 * 2 1 4 4 S 1.71197 * 119.99927 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99914 * 179.97438 * 3 2 1 6 6 C 1.39143 * 120.00036 * 185.51882 * 5 3 2 7 7 C 1.39514 * 119.82950 * 42.15622 * 6 5 3 8 8 C 1.36362 * 120.16142 * 180.27848 * 7 6 5 9 9 C 1.40878 * 119.83130 * 359.45120 * 8 7 6 10 10 C 1.41140 * 120.15947 * 180.27705 * 9 8 7 11 11 H 1.08007 * 119.99786 * 205.10707 * 10 9 8 12 12 C 1.39885 * 120.00207 * 25.11353 * 10 9 8 13 13 N 1.30883 * 120.00310 * 17.71978 * 12 10 9 14 14 Si 1.86804 * 119.99980 * 197.72316 * 12 10 9 15 15 H 1.48504 * 109.47149 * 94.73588 * 14 12 10 16 16 H 1.48493 * 109.47091 * 214.73889 * 14 12 10 17 17 H 1.48500 * 109.47050 * 334.73573 * 14 12 10 18 18 C 1.40880 * 119.67536 * 0.56557 * 9 8 7 19 19 C 1.36352 * 119.83302 * 359.71067 * 18 9 8 20 20 H 1.08996 * 109.47447 * 60.00392 * 1 2 3 21 21 H 1.09009 * 109.46935 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47510 * 299.99503 * 1 2 3 23 23 H 0.97004 * 120.00224 * 180.02562 * 2 1 3 24 24 H 0.96999 * 120.00240 * 5.52934 * 5 3 2 25 25 H 1.07998 * 119.92168 * 359.97438 * 7 6 5 26 26 H 1.08001 * 120.08468 * 179.72540 * 8 7 6 27 27 H 0.96990 * 120.00073 * 180.02562 * 13 12 10 28 28 H 1.07999 * 120.08295 * 179.69013 * 18 9 8 29 29 H 1.07997 * 119.92098 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 16 1.2828 2.6498 0.0007 5 7 3.4866 1.1672 0.0005 6 6 4.1823 2.3666 0.1164 7 6 3.7519 3.3334 1.0255 8 6 4.4253 4.5136 1.1406 9 6 5.5649 4.7505 0.3469 10 6 6.2705 5.9672 0.4646 11 1 6.8574 6.3335 -0.3648 12 6 6.2097 6.6987 1.6554 13 7 5.8059 6.1212 2.7583 14 14 6.7049 8.4999 1.6715 15 1 5.4974 9.3468 1.4980 16 1 7.3543 8.8231 2.9671 17 1 7.6565 8.7615 0.5619 18 6 5.9931 3.7696 -0.5691 19 6 5.3064 2.5966 -0.6772 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.9500 -0.8401 -0.0004 24 1 3.9716 0.3310 -0.0800 25 1 2.8805 3.1488 1.6361 26 1 4.0884 5.2630 1.8416 27 1 5.7634 6.6285 3.5839 28 1 6.8629 3.9464 -1.1844 29 1 5.6331 1.8438 -1.3793 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018145475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:42 Heat of formation + Delta-G solvation = 20.947275 kcal Electronic energy + Delta-G solvation = -13917.759516 eV Core-core repulsion = 11544.989333 eV Total energy + Delta-G solvation = -2372.770183 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66853 -38.84155 -36.46130 -34.85048 -31.43124 -31.02654 -28.23323 -26.29789 -24.90350 -22.98541 -22.43063 -19.56232 -19.23103 -18.86934 -17.14358 -16.70429 -16.05945 -16.02659 -15.68332 -15.10457 -14.51108 -13.93702 -13.78813 -13.57707 -13.24699 -13.08220 -12.79377 -12.57899 -12.27642 -12.15274 -11.65657 -11.38526 -11.04045 -10.49111 -9.56918 -9.17955 -8.82640 -8.65343 -8.10156 -6.29338 0.21236 0.95587 1.11458 1.25501 1.39836 1.53446 1.54963 1.76310 2.21285 2.74698 2.77478 3.77341 4.34784 4.41478 4.53731 4.63220 4.84789 4.95210 5.09223 5.13172 5.18915 5.36217 5.46017 5.72321 5.83725 6.02087 6.12828 6.25406 6.37253 6.60906 6.71420 6.93163 7.05109 8.31241 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.048409 B = 0.006057 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.268905 B = 4621.421440 C = 4940.657048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.666 5.666 3 C 0.568 3.432 4 S -0.748 6.748 5 N -0.582 5.582 6 C -0.022 4.022 7 C -0.044 4.044 8 C -0.190 4.190 9 C 0.090 3.910 10 C -0.489 4.489 11 H 0.082 0.918 12 C 0.033 3.967 13 N -0.817 5.817 14 Si 0.982 3.018 15 H -0.268 1.268 16 H -0.266 1.266 17 H -0.253 1.253 18 C -0.238 4.238 19 C -0.075 4.075 20 H 0.062 0.938 21 H 0.128 0.872 22 H 0.060 0.940 23 H 0.420 0.580 24 H 0.418 0.582 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.289 0.711 28 H 0.109 0.891 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 -12.931 -2.842 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.297 5.297 3 C 0.205 3.795 4 S -0.622 6.622 5 N -0.205 5.205 6 C -0.115 4.115 7 C -0.066 4.066 8 C -0.211 4.211 9 C 0.087 3.913 10 C -0.517 4.517 11 H 0.100 0.900 12 C -0.183 4.183 13 N -0.442 5.442 14 Si 0.803 3.197 15 H -0.193 1.193 16 H -0.190 1.190 17 H -0.177 1.177 18 C -0.259 4.259 19 C -0.095 4.095 20 H 0.080 0.920 21 H 0.146 0.854 22 H 0.078 0.922 23 H 0.260 0.740 24 H 0.259 0.741 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.083 -11.940 -2.579 12.880 hybrid contribution 0.847 -0.387 0.239 0.961 sum -3.236 -12.327 -2.340 12.958 Atomic orbital electron populations 1.21989 0.74937 1.04904 1.03167 1.44664 1.09584 1.04548 1.70901 1.21813 0.85216 0.91693 0.80828 1.93614 1.68342 1.21951 1.78319 1.41572 1.02133 1.09896 1.66865 1.16816 0.99626 0.89455 1.05638 1.20474 0.96265 0.93935 0.95906 1.20736 0.97443 0.97811 1.05128 1.18033 0.90190 0.92597 0.90476 1.19897 1.26980 1.05043 0.99812 0.90024 1.26824 0.92794 1.04589 0.94075 1.69909 1.34599 1.39180 1.00518 0.85185 0.79238 0.76119 0.79157 1.19259 1.19014 1.17688 1.20724 1.03378 0.95054 1.06731 1.20321 0.94968 0.97370 0.96874 0.91959 0.85389 0.92166 0.74017 0.74149 0.88311 0.88848 0.90058 0.87244 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.16 127.77 1.30 2.89 15 2 N -0.67 -12.98 5.72 -371.70 -2.12 -15.10 15 3 C 0.57 18.26 7.73 179.06 1.38 19.65 15 4 S -0.75 -34.02 25.05 -56.49 -1.41 -35.43 15 5 N -0.58 -18.13 5.29 -189.60 -1.00 -19.13 15 6 C -0.02 -0.92 5.91 38.60 0.23 -0.69 15 7 C -0.04 -2.24 7.77 22.14 0.17 -2.07 15 8 C -0.19 -10.69 8.63 22.48 0.19 -10.50 15 9 C 0.09 4.95 5.57 -21.27 -0.12 4.83 15 10 C -0.49 -26.63 9.03 23.38 0.21 -26.42 15 11 H 0.08 4.24 7.91 -2.91 -0.02 4.21 15 12 C 0.03 1.70 5.13 85.23 0.44 2.14 15 13 N -0.82 -43.79 10.98 21.82 0.24 -43.55 15 14 Si 0.98 39.02 29.59 68.60 2.03 41.05 15 15 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 16 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 17 H -0.25 -9.64 7.11 99.48 0.71 -8.93 15 18 C -0.24 -11.43 9.74 22.48 0.22 -11.21 15 19 C -0.08 -3.11 9.90 22.14 0.22 -2.89 15 20 H 0.06 1.30 7.99 -2.39 -0.02 1.28 15 21 H 0.13 0.87 8.14 -2.38 -0.02 0.85 15 22 H 0.06 1.29 7.99 -2.39 -0.02 1.27 15 23 H 0.42 4.33 8.85 -92.71 -0.82 3.51 15 24 H 0.42 8.75 8.84 -92.71 -0.82 7.93 15 25 H 0.10 5.14 6.27 -4.62 -0.03 5.11 15 26 H 0.09 5.62 6.19 -2.91 -0.02 5.60 15 27 H 0.29 14.00 8.30 -92.72 -0.77 13.23 15 28 H 0.11 4.83 8.06 -2.91 -0.02 4.81 15 29 H 0.13 4.25 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -73.94 264.12 1.51 -72.43 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.46 Total: 24.01 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.24 Total: -24.27 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -2.89 Total: -77.78 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: -34.02 SS G_CDS: -1.41 Total: -35.43 kcal Total: -73.94 1.51 -72.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018145475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.381 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds