Wall clock time and date at job start Sun Mar 29 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38567 * 119.79712 * 2 1 4 4 C 1.37759 * 120.31075 * 180.02562 * 3 2 1 5 5 C 1.39797 * 119.89567 * 0.25259 * 4 3 2 6 6 C 1.47347 * 120.19516 * 179.74547 * 5 4 3 7 7 O 1.21551 * 119.99905 * 179.97438 * 6 5 4 8 8 O 1.34777 * 120.00143 * 359.97438 * 6 5 4 9 9 C 1.34868 * 116.99819 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00202 * 0.02562 * 9 8 6 11 11 C 1.38791 * 119.99893 * 179.97438 * 9 8 6 12 12 N 1.31430 * 119.99865 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00189 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46988 * 59.99930 * 13 11 9 15 15 H 1.48498 * 109.47245 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46905 * 300.00022 * 13 11 9 17 17 C 1.40227 * 119.60390 * 359.51663 * 5 4 3 18 18 O 1.35648 * 120.15898 * 180.23451 * 17 5 4 19 19 C 1.38063 * 119.79369 * 180.02562 * 2 1 3 20 20 C 1.50702 * 119.95317 * 359.97438 * 19 2 1 21 21 H 1.08999 * 109.47376 * 90.00486 * 1 2 3 22 22 H 1.09001 * 109.47442 * 210.00460 * 1 2 3 23 23 H 1.08999 * 109.46922 * 330.00802 * 1 2 3 24 24 H 1.08003 * 119.84122 * 0.03846 * 3 2 1 25 25 H 1.08002 * 120.04748 * 179.97438 * 4 3 2 26 26 H 0.97002 * 119.99656 * 180.02562 * 12 11 9 27 27 H 0.96697 * 113.99554 * 270.23294 * 18 17 5 28 28 H 1.09003 * 109.47068 * 89.99812 * 20 19 2 29 29 H 1.09005 * 109.47271 * 209.99320 * 20 19 2 30 30 H 1.08997 * 109.47580 * 329.99705 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2025 0.0000 4 6 3.5731 1.2148 -0.0005 5 6 4.2807 0.0092 -0.0064 6 6 5.7542 0.0147 -0.0127 7 8 6.3659 -1.0357 -0.0173 8 8 6.4237 1.1844 -0.0133 9 6 7.7708 1.1188 -0.0186 10 1 8.2647 0.1584 -0.0226 11 6 8.5224 2.2856 -0.0200 12 7 7.9213 3.4544 -0.0157 13 14 10.3882 2.1948 -0.0281 14 1 10.8433 1.4734 -1.2437 15 1 10.9506 3.5692 -0.0278 16 1 10.8537 1.4697 1.1813 17 6 3.5799 -1.2054 -0.0015 18 8 4.2552 -2.3819 -0.0023 19 6 2.1930 -1.1981 -0.0005 20 6 1.4337 -2.4999 -0.0005 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.6497 2.1344 0.0006 25 1 4.1055 2.1545 -0.0009 26 1 8.4467 4.2699 -0.0171 27 1 4.4504 -2.7226 -0.8859 28 1 1.2503 -2.8135 -1.0282 29 1 2.0197 -3.2624 0.5128 30 1 0.4822 -2.3656 0.5137 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052114919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:01 Heat of formation + Delta-G solvation = -128.426836 kcal Electronic energy + Delta-G solvation = -16263.870954 eV Core-core repulsion = 13409.577802 eV Total energy + Delta-G solvation = -2854.293152 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.55935 -40.31180 -37.97740 -37.06744 -34.62331 -34.20091 -31.99621 -28.97643 -27.98163 -26.99215 -23.85245 -22.80239 -21.55083 -19.88187 -19.02801 -18.48087 -17.33076 -16.92744 -16.64129 -16.17217 -16.04590 -15.30166 -14.90913 -14.62253 -14.15483 -13.71069 -13.63939 -13.55647 -13.27717 -13.17901 -12.59456 -12.41828 -12.31721 -12.23701 -12.17783 -12.05499 -11.67554 -10.91796 -10.73794 -9.67150 -9.58672 -8.59205 -6.36710 -0.28141 0.24004 1.31235 1.36722 1.47900 1.76798 2.08116 2.60468 2.70463 2.98272 3.21528 3.79550 3.90967 4.11118 4.27007 4.31852 4.61403 4.76517 4.78805 4.81676 4.93318 4.98320 5.08335 5.19332 5.32604 5.35427 5.41489 5.55588 5.77807 5.87432 6.58786 6.75583 6.84995 7.71494 8.61609 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.044504 B = 0.006269 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.007379 B = 4465.226125 C = 5071.263386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.042 4.042 3 C -0.133 4.133 4 C -0.071 4.071 5 C -0.169 4.169 6 C 0.431 3.569 7 O -0.567 6.567 8 O -0.237 6.237 9 C -0.423 4.423 10 H 0.081 0.919 11 C -0.003 4.003 12 N -0.899 5.899 13 Si 1.021 2.979 14 H -0.260 1.260 15 H -0.256 1.256 16 H -0.263 1.263 17 C 0.149 3.851 18 O -0.490 6.490 19 C -0.128 4.128 20 C -0.106 4.106 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.162 0.838 25 H 0.120 0.880 26 H 0.281 0.719 27 H 0.402 0.598 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.821 -5.469 -1.764 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.043 4.043 3 C -0.150 4.150 4 C -0.089 4.089 5 C -0.171 4.171 6 C 0.281 3.719 7 O -0.466 6.466 8 O -0.146 6.146 9 C -0.498 4.498 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.536 5.536 13 Si 0.839 3.161 14 H -0.185 1.185 15 H -0.179 1.179 16 H -0.187 1.187 17 C 0.104 3.896 18 O -0.302 6.302 19 C -0.129 4.129 20 C -0.162 4.162 21 H 0.112 0.888 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.180 0.820 25 H 0.138 0.862 26 H 0.090 0.910 27 H 0.261 0.739 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.646 -5.446 -1.165 16.608 hybrid contribution 1.573 0.080 -0.453 1.639 sum -14.073 -5.366 -1.617 15.148 Atomic orbital electron populations 1.21028 0.87064 1.04772 1.04220 1.20341 0.98556 0.90881 0.94485 1.21315 0.92064 0.99806 1.01832 1.21434 0.95688 0.96280 0.95514 1.19852 0.88892 0.96301 1.12013 1.21641 0.89802 0.82612 0.77859 1.90586 1.70847 1.33521 1.51613 1.83933 1.21866 1.31999 1.76767 1.21457 0.78136 0.95319 1.54916 0.90164 1.26607 1.06337 0.92947 0.94489 1.70059 1.39028 0.98297 1.46229 0.84648 0.72796 0.78825 0.79808 1.18457 1.17931 1.18719 1.18525 0.90219 0.83617 0.97280 1.84646 1.76768 1.34434 1.34330 1.20299 0.90682 0.98327 1.03555 1.20796 1.00004 0.91650 1.03714 0.88849 0.89245 0.89661 0.82048 0.86188 0.90966 0.73932 0.89433 0.91868 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.59 71.24 0.68 -0.83 16 2 C -0.04 -1.00 5.88 -19.83 -0.12 -1.12 16 3 C -0.13 -3.69 9.67 22.23 0.21 -3.48 16 4 C -0.07 -2.76 9.61 22.53 0.22 -2.54 16 5 C -0.17 -7.64 5.89 -20.02 -0.12 -7.76 16 6 C 0.43 24.64 7.83 70.22 0.55 25.19 16 7 O -0.57 -34.18 14.41 26.68 0.38 -33.79 16 8 O -0.24 -15.06 8.99 10.74 0.10 -14.96 16 9 C -0.42 -27.09 9.65 67.95 0.66 -26.43 16 10 H 0.08 5.21 6.86 -2.91 -0.02 5.19 16 11 C 0.00 -0.19 5.49 84.89 0.47 0.27 16 12 N -0.90 -54.42 13.67 21.63 0.30 -54.13 16 13 Si 1.02 44.73 29.55 68.60 2.03 46.76 16 14 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 15 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 17 C 0.15 5.61 6.69 22.86 0.15 5.76 16 18 O -0.49 -18.44 10.62 -68.70 -0.73 -19.17 16 19 C -0.13 -3.51 5.89 -19.80 -0.12 -3.63 16 20 C -0.11 -1.98 9.37 71.24 0.67 -1.31 16 21 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.09 0.92 5.92 -2.39 -0.01 0.91 16 23 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 24 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 25 H 0.12 5.16 7.61 -2.91 -0.02 5.14 16 26 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.40 12.06 9.06 -74.06 -0.67 11.39 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.34 7.53 -2.38 -0.02 1.32 16 30 H 0.10 1.29 5.92 -2.39 -0.01 1.28 16 Total: -1.00 -80.91 267.76 5.84 -75.07 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.51 Total: 16.09 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.26 Total: -15.88 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.30 Total: -54.13 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -0.25 Total: -67.92 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -80.91 5.84 -75.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052114919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.356 kcal (2) G-P(sol) polarization free energy of solvation -80.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds