Wall clock time and date at job start Sun Mar 29 2020 22:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35704 * 117.00022 * 180.02562 * 3 2 1 5 5 C 1.39023 * 119.89851 * 359.72524 * 4 3 2 6 6 C 1.37681 * 120.09168 * 179.72769 * 5 4 3 7 7 C 1.39826 * 119.89920 * 0.54149 * 6 5 4 8 8 C 1.47415 * 120.09499 * 179.70238 * 7 6 5 9 9 O 1.21533 * 120.00477 * 180.02562 * 8 7 6 10 10 O 1.34775 * 119.99659 * 0.03101 * 8 7 6 11 11 C 1.34865 * 117.00118 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99438 * 359.97438 * 11 10 8 13 13 C 1.38789 * 120.00304 * 179.97438 * 11 10 8 14 14 N 1.31424 * 119.99872 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00166 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47106 * 59.99848 * 15 13 11 17 17 H 1.48494 * 109.47208 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46822 * 300.00065 * 15 13 11 19 19 C 1.39826 * 119.81021 * 359.73071 * 7 6 5 20 20 C 1.37665 * 119.90456 * 359.97438 * 19 7 6 21 21 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 26 26 H 1.07992 * 119.95416 * 359.97436 * 5 4 3 27 27 H 1.07994 * 120.04787 * 180.27134 * 6 5 4 28 28 H 0.96999 * 119.99869 * 180.02562 * 14 13 11 29 29 H 1.08003 * 120.04621 * 179.97438 * 19 7 6 30 30 H 1.08003 * 119.95372 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3516 1.5253 -0.0005 5 6 4.1966 0.4213 0.0047 6 6 5.5621 0.5972 -0.0015 7 6 6.0986 1.8884 -0.0016 8 6 7.5600 2.0817 -0.0016 9 8 8.0245 3.2048 -0.0012 10 8 8.3810 1.0129 -0.0021 11 6 9.7070 1.2594 -0.0026 12 1 10.0669 2.2776 -0.0030 13 6 10.6089 0.2045 -0.0026 14 7 10.1709 -1.0346 -0.0016 15 14 12.4455 0.5459 -0.0025 16 1 12.8042 1.3247 1.2100 17 1 13.1880 -0.7401 -0.0019 18 1 12.8042 1.3247 -1.2151 19 6 5.2449 2.9958 -0.0012 20 6 3.8807 2.8108 -0.0011 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.7813 -0.5756 0.0096 27 1 6.2178 -0.2609 -0.0018 28 1 10.8013 -1.7718 -0.0012 29 1 5.6551 3.9949 -0.0008 30 1 3.2206 3.6656 -0.0003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060572998.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:36 Heat of formation + Delta-G solvation = -118.930094 kcal Electronic energy + Delta-G solvation = -15732.312439 eV Core-core repulsion = 12878.431097 eV Total energy + Delta-G solvation = -2853.881343 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46786 -40.71034 -38.45032 -37.13686 -34.35170 -32.99880 -32.01829 -30.93832 -27.62253 -25.23425 -24.47292 -22.96577 -21.67225 -19.91029 -19.41386 -18.78166 -17.24550 -17.08367 -16.70289 -16.55761 -16.15613 -15.67894 -14.84726 -14.64554 -14.44829 -14.32611 -13.74514 -13.52416 -13.34309 -13.13738 -12.85710 -12.65005 -12.39372 -12.17520 -12.08951 -11.74823 -11.64656 -11.15682 -10.72332 -10.14332 -9.34564 -8.57722 -6.35043 -0.19171 0.28901 1.33525 1.38396 1.49770 1.76978 2.09254 2.14959 2.72290 2.74289 3.02879 3.71725 3.82381 4.09499 4.12268 4.21715 4.28342 4.41633 4.45042 4.64363 4.87785 4.97969 4.98553 5.04497 5.12844 5.25392 5.29915 5.48392 5.58425 5.79357 6.33424 6.59138 6.86762 7.71459 8.62837 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.050016 B = 0.004955 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.687018 B = 5649.207279 C = 6188.446121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.037 3.963 3 O -0.317 6.317 4 C 0.159 3.841 5 C -0.211 4.211 6 C -0.035 4.035 7 C -0.167 4.167 8 C 0.436 3.564 9 O -0.585 6.585 10 O -0.234 6.234 11 C -0.424 4.424 12 H 0.082 0.918 13 C -0.002 4.002 14 N -0.898 5.898 15 Si 1.020 2.980 16 H -0.261 1.261 17 H -0.257 1.257 18 H -0.261 1.261 19 C -0.028 4.028 20 C -0.157 4.157 21 H 0.100 0.900 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.162 0.838 27 H 0.126 0.874 28 H 0.281 0.719 29 H 0.140 0.860 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 -0.751 0.005 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.037 4.037 3 O -0.230 6.230 4 C 0.112 3.888 5 C -0.230 4.230 6 C -0.053 4.053 7 C -0.168 4.168 8 C 0.286 3.714 9 O -0.485 6.485 10 O -0.142 6.142 11 C -0.499 4.499 12 H 0.100 0.900 13 C -0.203 4.203 14 N -0.535 5.535 15 Si 0.838 3.162 16 H -0.186 1.186 17 H -0.181 1.181 18 H -0.186 1.186 19 C -0.046 4.046 20 C -0.176 4.176 21 H 0.118 0.882 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.180 0.820 27 H 0.144 0.856 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.938 -0.594 0.007 16.948 hybrid contribution 1.202 -0.056 -0.001 1.203 sum -15.736 -0.650 0.006 15.750 Atomic orbital electron populations 1.21804 0.90958 1.04278 1.03399 1.23216 0.97268 0.80471 1.02758 1.86032 1.17712 1.31766 1.87519 1.19297 0.82949 0.93946 0.92622 1.21381 0.92410 0.99863 1.09312 1.21296 0.95709 0.95881 0.92429 1.19219 0.88456 0.96176 1.12960 1.21721 0.89227 0.83175 0.77245 1.90563 1.78731 1.26307 1.52908 1.83921 1.18754 1.35030 1.76472 1.21479 0.78255 0.95254 1.54948 0.90021 1.26577 1.05606 0.93608 0.94460 1.70048 1.37985 0.99301 1.46130 0.84663 0.73009 0.78699 0.79830 1.18585 1.18058 1.18568 1.21080 0.92255 0.98106 0.93160 1.20509 0.93711 0.96114 1.07222 0.88178 0.91610 0.91607 0.90812 0.90807 0.82047 0.85632 0.90980 0.84210 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.04 0.58 5.45 71.98 0.39 0.97 16 3 O -0.32 -7.14 10.12 -90.25 -0.91 -8.06 16 4 C 0.16 4.28 6.70 22.65 0.15 4.43 16 5 C -0.21 -6.04 9.01 22.33 0.20 -5.84 16 6 C -0.03 -1.31 9.61 22.52 0.22 -1.09 16 7 C -0.17 -7.22 5.87 -20.09 -0.12 -7.33 16 8 C 0.44 24.13 7.83 70.24 0.55 24.68 16 9 O -0.58 -34.56 15.59 19.73 0.31 -34.25 16 10 O -0.23 -14.45 8.98 10.79 0.10 -14.36 16 11 C -0.42 -26.63 9.65 67.95 0.66 -25.97 16 12 H 0.08 5.19 6.86 -2.91 -0.02 5.17 16 13 C 0.00 -0.10 5.49 84.89 0.47 0.37 16 14 N -0.90 -53.37 13.67 21.63 0.30 -53.07 16 15 Si 1.02 43.95 29.55 68.60 2.03 45.98 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 19 C -0.03 -0.98 9.59 22.52 0.22 -0.76 16 20 C -0.16 -4.40 9.97 22.32 0.22 -4.18 16 21 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 25 H 0.07 1.04 7.64 -2.39 -0.02 1.02 16 26 H 0.16 3.51 6.27 -2.91 -0.02 3.49 16 27 H 0.13 5.17 7.60 -2.91 -0.02 5.15 16 28 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.14 4.87 7.64 -2.91 -0.02 4.85 16 30 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -75.10 273.16 6.66 -68.44 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.15 Total: 10.93 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.69 Total: -15.61 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.30 Total: -53.07 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.51 Total: -56.67 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.10 6.66 -68.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060572998.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.491 kcal (2) G-P(sol) polarization free energy of solvation -75.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds