Wall clock time and date at job start Sun Mar 29 2020 21:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99743 * 2 1 4 4 H 1.48494 * 109.47480 * 270.00075 * 3 2 1 5 5 H 1.48498 * 109.46913 * 30.00517 * 3 2 1 6 6 H 1.48500 * 109.46882 * 150.00005 * 3 2 1 7 7 C 1.37876 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99374 * 173.06384 * 7 2 1 9 9 C 1.50694 * 120.00101 * 353.06335 * 7 2 1 10 10 C 1.53003 * 115.54784 * 84.96553 * 9 7 2 11 11 N 1.46900 * 109.47139 * 65.16807 * 10 9 7 12 12 C 1.46901 * 110.99976 * 174.69685 * 11 10 9 13 13 C 1.52999 * 109.47103 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.63918 * 304.57979 * 13 12 11 15 15 C 1.53026 * 109.64256 * 65.00414 * 13 12 11 16 16 C 1.50065 * 110.14678 * 169.12185 * 15 13 12 17 17 C 1.29446 * 124.07256 * 342.86389 * 16 15 13 18 18 C 1.50061 * 124.07898 * 0.49666 * 17 16 15 19 19 C 1.53027 * 110.14834 * 342.84307 * 18 17 16 20 20 C 1.52998 * 117.49769 * 230.63452 * 9 7 2 21 21 C 1.52994 * 117.49826 * 299.29431 * 9 7 2 22 22 H 0.97003 * 120.00228 * 5.05083 * 1 2 3 23 23 H 1.08994 * 109.47291 * 305.16295 * 10 9 7 24 24 H 1.09004 * 109.46635 * 185.16236 * 10 9 7 25 25 H 1.00892 * 111.00072 * 298.65501 * 11 10 9 26 26 H 1.09006 * 109.46847 * 59.99892 * 12 11 10 27 27 H 1.09003 * 109.47339 * 300.00472 * 12 11 10 28 28 H 1.09004 * 109.35487 * 48.91027 * 15 13 12 29 29 H 1.08999 * 109.35708 * 289.32566 * 15 13 12 30 30 H 1.07991 * 117.96030 * 162.84802 * 16 15 13 31 31 H 1.08002 * 117.96026 * 180.47234 * 17 16 15 32 32 H 1.09006 * 109.36125 * 103.05198 * 18 17 16 33 33 H 1.09002 * 109.36275 * 222.63486 * 18 17 16 34 34 H 1.08999 * 109.64029 * 169.11890 * 19 18 17 35 35 H 1.08994 * 109.64324 * 289.75334 * 19 18 17 36 36 H 1.09003 * 117.49886 * 215.00605 * 20 9 7 37 37 H 1.09006 * 117.50195 * 0.02562 * 20 9 7 38 38 H 1.08999 * 117.50120 * 359.97438 * 21 9 7 39 39 H 1.09004 * 117.49864 * 144.97689 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0787 -1.1973 -0.1135 9 6 1.2593 -2.4944 0.1565 10 6 0.6847 -3.0854 -1.1325 11 7 1.7840 -3.4606 -2.0318 12 6 1.2755 -4.1469 -3.2270 13 6 2.4469 -4.5205 -4.1376 14 1 3.0277 -3.6285 -4.3719 15 6 3.3391 -5.5453 -3.4338 16 6 4.3330 -6.1168 -4.4020 17 6 4.2215 -6.0344 -5.6890 18 6 3.0884 -5.3466 -6.3926 19 6 1.9141 -5.1483 -5.4317 20 6 1.7625 -3.4730 1.2195 21 6 0.4609 -2.6998 1.4453 22 1 -0.4850 0.8368 -0.0740 23 1 0.0520 -2.3447 -1.6213 24 1 0.0924 -3.9690 -0.8945 25 1 2.3353 -2.6544 -2.2848 26 1 0.5950 -3.4858 -3.7636 27 1 0.7441 -5.0506 -2.9286 28 1 2.7205 -6.3490 -3.0342 29 1 3.8704 -5.0599 -2.6151 30 1 5.1949 -6.6285 -4.0001 31 1 4.9922 -6.4886 -6.2942 32 1 3.4252 -4.3759 -6.7567 33 1 2.7652 -5.9547 -7.2375 34 1 1.1779 -4.4845 -5.8849 35 1 1.4555 -6.1119 -5.2097 36 1 1.6842 -4.5379 1.0006 37 1 2.6323 -3.1761 1.8056 38 1 0.4749 -1.8946 2.1798 39 1 -0.4741 -3.2558 1.3749 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:28 Heat of formation + Delta-G solvation = 17.252892 kcal Electronic energy + Delta-G solvation = -16644.321987 eV Core-core repulsion = 14165.730833 eV Total energy + Delta-G solvation = -2478.591154 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.67650 -36.79247 -34.35505 -31.88877 -31.00552 -30.46034 -26.16726 -25.15742 -23.44577 -22.31046 -20.95000 -20.60436 -18.95406 -17.74944 -16.08229 -15.73160 -14.75139 -14.57032 -14.33138 -14.13171 -13.78548 -13.29260 -12.89195 -12.58303 -12.36443 -12.23701 -12.02733 -11.40285 -11.32406 -11.10700 -10.93922 -10.82509 -10.46196 -10.41434 -10.20379 -10.05797 -9.96576 -9.34321 -8.87013 -8.70523 -8.38794 -8.01736 -7.40736 -5.99788 -4.05532 2.39109 3.28963 3.36932 3.40914 4.41863 4.72136 4.86229 4.90986 5.19301 5.29166 5.39499 5.45565 5.51136 5.63933 5.69174 5.75529 5.92668 6.00091 6.05876 6.10332 6.20483 6.25934 6.28464 6.48259 6.54021 6.61172 6.66412 6.77623 6.90034 6.90345 6.97526 7.08309 7.21568 7.57396 7.61218 7.90999 8.07239 8.35826 8.54065 8.97739 9.59856 11.08167 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.005760 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.402877 B = 4860.110265 C = 5244.535304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.492 4.492 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.106 3.894 11 N -0.680 5.680 12 C 0.063 3.937 13 C -0.083 4.083 14 H 0.069 0.931 15 C -0.078 4.078 16 C -0.145 4.145 17 C -0.172 4.172 18 C -0.087 4.087 19 C -0.115 4.115 20 C -0.200 4.200 21 C -0.163 4.163 22 H 0.259 0.741 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.346 0.654 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -9.536 -9.565 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.050 3.950 10 C -0.022 4.022 11 N -0.311 5.311 12 C -0.067 4.067 13 C -0.102 4.102 14 H 0.088 0.912 15 C -0.115 4.115 16 C -0.163 4.163 17 C -0.190 4.190 18 C -0.124 4.124 19 C -0.153 4.153 20 C -0.237 4.237 21 C -0.201 4.201 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.164 0.836 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.881 -9.987 -9.155 14.093 hybrid contribution 0.028 1.657 -0.491 1.728 sum 3.908 -8.331 -9.645 13.331 Atomic orbital electron populations 1.69995 1.05871 1.26531 1.49395 1.25002 0.94758 0.98791 0.94755 0.86684 0.80066 0.83774 0.78053 1.20803 1.21298 1.19807 1.20465 0.93095 0.88857 1.50547 0.92226 1.18735 0.97260 0.93304 0.85689 1.21410 0.91069 0.95800 0.93962 1.60428 1.23939 1.32147 1.14562 1.21959 0.95100 0.98323 0.91282 1.21189 0.96593 0.98288 0.94087 0.91217 1.20397 0.96058 0.97824 0.97178 1.22255 0.99388 0.99596 0.95111 1.21972 0.99322 1.01865 0.95802 1.20402 0.94272 0.99986 0.97780 1.21631 0.97148 1.00899 0.95618 1.22862 0.97555 0.95844 1.07478 1.22529 0.92457 1.01347 1.03818 0.93162 0.94816 0.94630 0.83592 0.96200 0.92052 0.91160 0.89719 0.88445 0.88663 0.91245 0.91647 0.91907 0.91916 0.91714 0.90970 0.90403 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.87 12.95 55.43 0.72 -24.15 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 3 Si 0.89 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.49 -13.19 8.32 -34.44 -0.29 -13.48 16 8 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 9 C 0.05 1.25 1.56 -155.67 -0.24 1.01 16 10 C 0.11 2.40 5.54 -3.82 -0.02 2.37 16 11 N -0.68 -13.22 6.13 -113.77 -0.70 -13.91 16 12 C 0.06 1.02 5.07 -3.82 -0.02 1.00 16 13 C -0.08 -1.14 2.39 -90.41 -0.22 -1.35 16 14 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 15 C -0.08 -1.05 5.21 -28.18 -0.15 -1.20 16 16 C -0.15 -1.76 9.80 -35.90 -0.35 -2.11 16 17 C -0.17 -1.93 9.80 -35.90 -0.35 -2.28 16 18 C -0.09 -0.93 6.12 -28.18 -0.17 -1.10 16 19 C -0.11 -1.35 5.31 -26.52 -0.14 -1.49 16 20 C -0.20 -4.52 9.96 -26.70 -0.27 -4.79 16 21 C -0.16 -3.93 9.46 -26.70 -0.25 -4.19 16 22 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 25 H 0.35 7.09 8.30 -39.30 -0.33 6.76 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 28 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 30 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 38 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -27.25 316.28 -9.84 -37.09 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.04 Total: 6.04 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -2.56 Total: -25.81 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.02 Total: -38.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.25 -9.84 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.345 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds