Wall clock time and date at job start Sun Mar 29 2020 22:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46932 * 2 1 4 4 C 1.36942 * 119.99969 * 275.82868 * 3 2 1 5 5 H 1.07994 * 120.00109 * 35.72975 * 4 3 2 6 6 C 1.38817 * 120.00035 * 215.72719 * 4 3 2 7 7 N 1.31616 * 119.99830 * 23.01912 * 6 4 3 8 8 Si 1.86795 * 119.99921 * 203.02216 * 6 4 3 9 9 H 1.48497 * 109.47487 * 59.99815 * 8 6 4 10 10 H 1.48495 * 109.47111 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47239 * 299.99802 * 8 6 4 12 12 C 1.46502 * 120.00241 * 95.82924 * 3 2 1 13 13 C 1.50696 * 109.47238 * 269.99777 * 12 3 2 14 14 C 1.32832 * 124.72019 * 90.00149 * 13 12 3 15 15 C 1.44402 * 113.06909 * 180.28919 * 14 13 12 16 16 C 1.43206 * 123.44621 * 179.72840 * 15 14 13 17 17 N 6.69520 * 51.26701 * 62.96325 * 2 1 3 18 18 C 1.35946 * 113.09871 * 359.50425 * 15 14 13 19 19 S 1.70441 * 110.83128 * 0.47759 * 18 15 14 20 20 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47583 * 300.00425 * 1 2 3 22 22 H 1.09004 * 109.47229 * 60.00292 * 1 2 3 23 23 H 1.08999 * 109.47125 * 240.00185 * 2 1 3 24 24 H 1.09004 * 109.47229 * 119.99708 * 2 1 3 25 25 H 0.97008 * 120.00044 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47188 * 149.99772 * 12 3 2 27 27 H 1.08997 * 109.47156 * 30.00234 * 12 3 2 28 28 H 1.08001 * 123.45804 * 0.02562 * 14 13 12 29 29 H 1.08005 * 124.58282 * 180.20173 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1329 2.0669 -1.1798 5 1 1.4104 1.9113 -1.9672 6 6 3.1779 2.9620 -1.3637 7 7 4.2796 2.8423 -0.6536 8 14 3.0204 4.3365 -2.6188 9 1 1.8659 5.2007 -2.2644 10 1 4.2640 5.1480 -2.6228 11 1 2.8063 3.7531 -3.9675 12 6 2.3839 2.0289 1.2622 13 6 1.1767 2.7222 1.8392 14 6 0.3077 2.1603 2.6721 15 6 -0.7587 3.0519 3.0633 16 6 -1.8184 2.6739 3.9492 17 7 -2.6592 2.3741 4.6520 18 6 -0.6508 4.2882 2.5084 19 16 0.7229 4.3841 1.5040 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 5.0100 3.4676 -0.7823 26 1 3.1708 2.7609 1.0803 27 1 2.7423 1.2775 1.9657 28 1 0.3881 1.1402 3.0174 29 1 -1.3445 5.0987 2.6774 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092399152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:28 Heat of formation + Delta-G solvation = 73.544542 kcal Electronic energy + Delta-G solvation = -14220.596788 eV Core-core repulsion = 11850.107394 eV Total energy + Delta-G solvation = -2370.489394 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.89614 -36.31094 -35.22765 -31.99833 -30.76780 -28.60863 -25.66634 -24.46542 -23.42157 -20.62367 -19.55768 -17.52264 -16.69411 -16.35448 -14.94055 -14.06646 -14.04996 -13.75554 -13.62316 -13.16853 -12.81306 -12.57641 -12.39211 -12.07310 -11.87850 -11.53295 -11.23988 -11.04710 -10.82271 -10.65433 -10.40360 -10.18082 -9.95500 -9.92136 -8.63268 -8.26412 -7.92389 -6.78637 -5.97371 -3.49649 1.17902 2.05894 2.43434 2.51133 2.97156 3.29232 3.35888 3.38832 3.77459 4.36788 4.41237 5.12894 5.19828 5.46001 5.75692 5.89560 6.00072 6.22993 6.32610 6.33598 6.48893 6.59316 6.67116 6.78447 6.85284 7.11570 7.38905 7.69917 7.72880 8.33825 9.00627 9.63056 10.20572 11.03514 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.027468 B = 0.009096 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.117469 B = 3077.438254 C = 3646.275214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.142 3.858 3 N -0.571 5.571 4 C -0.258 4.258 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.881 5.881 8 Si 0.888 3.112 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.196 3.804 13 C -0.152 4.152 14 C -0.137 4.137 15 C -0.059 4.059 16 C 0.288 3.712 17 N -0.448 5.448 18 C -0.232 4.232 19 S 0.220 5.780 20 H 0.035 0.965 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.259 0.741 26 H 0.110 0.890 27 H 0.052 0.948 28 H 0.141 0.859 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 1.766 3.623 5.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 N -0.290 5.290 4 C -0.388 4.388 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.205 1.205 12 C 0.067 3.933 13 C -0.273 4.273 14 C -0.166 4.166 15 C -0.079 4.079 16 C -0.028 4.028 17 N -0.125 5.125 18 C -0.374 4.374 19 S 0.487 5.513 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.070 0.930 28 H 0.159 0.841 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.349 2.498 3.767 6.273 hybrid contribution -0.691 -0.217 -0.026 0.725 sum -5.040 2.281 3.741 6.678 Atomic orbital electron populations 1.22367 0.99784 0.99146 1.01735 1.20889 0.91852 0.86584 0.99065 1.43801 1.75170 1.08178 1.01857 1.19015 1.06174 1.20103 0.93468 0.91920 1.25116 0.94005 1.01211 0.98245 1.69982 1.03296 1.36305 1.42672 0.86583 0.77455 0.82638 0.81684 1.20172 1.21367 1.20507 1.19775 0.90700 0.96672 0.86146 1.26233 1.05137 0.96527 0.99427 1.20772 0.93881 0.99925 1.02065 1.16289 0.94939 0.94705 1.01992 1.25315 0.92324 0.92761 0.92358 1.81180 1.11207 1.08711 1.11390 1.25471 1.06762 1.00431 1.04729 1.83498 1.15463 1.11362 1.40983 0.94560 0.93126 0.93241 0.93449 0.94502 0.93113 0.87307 0.93004 0.84141 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 10.20 37.16 0.38 -2.62 15 2 C 0.14 2.77 6.44 -4.04 -0.03 2.74 15 3 N -0.57 -12.76 2.43 -174.61 -0.42 -13.19 15 4 C -0.26 -6.37 9.46 -15.06 -0.14 -6.51 15 5 H 0.06 1.58 7.93 -52.49 -0.42 1.17 15 6 C 0.02 0.38 4.93 -17.43 -0.09 0.30 15 7 N -0.88 -22.95 11.44 55.49 0.63 -22.32 15 8 Si 0.89 19.80 29.61 -169.99 -5.03 14.76 15 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 12 C 0.20 4.04 5.79 -5.19 -0.03 4.01 15 13 C -0.15 -2.74 6.00 -36.17 -0.22 -2.95 15 14 C -0.14 -2.24 8.58 -39.02 -0.33 -2.57 15 15 C -0.06 -0.92 5.84 -106.37 -0.62 -1.54 15 16 C 0.29 4.62 15.62 -22.47 -0.35 4.27 15 17 N -0.45 -7.75 18.54 41.84 0.78 -6.98 15 18 C -0.23 -3.36 10.78 29.91 0.32 -3.03 15 19 S 0.22 3.62 23.00 -107.50 -2.47 1.15 15 20 H 0.04 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.05 0.89 6.38 -51.93 -0.33 0.55 15 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.05 0.95 8.09 -51.93 -0.42 0.53 15 24 H 0.04 0.66 7.83 -51.93 -0.41 0.25 15 25 H 0.26 6.55 8.31 -40.82 -0.34 6.21 15 26 H 0.11 2.54 5.45 -51.93 -0.28 2.25 15 27 H 0.05 1.01 7.85 -51.93 -0.41 0.60 15 28 H 0.14 2.14 8.04 -52.49 -0.42 1.72 15 29 H 0.16 1.90 8.06 -52.48 -0.42 1.48 15 LS Contribution 274.20 15.07 4.13 4.13 Total: -1.00 -25.91 274.20 -6.58 -32.49 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.09 Total: -2.16 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.11 Total: -7.90 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.99 Total: -42.48 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.47 Total: 1.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -25.91 -6.58 -32.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.036 kcal (2) G-P(sol) polarization free energy of solvation -25.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds