Wall clock time and date at job start Sun Mar 29 2020 22:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46932 * 2 1 4 4 C 1.36942 * 119.99969 * 275.82868 * 3 2 1 5 5 H 1.07994 * 120.00109 * 35.72975 * 4 3 2 6 6 C 1.38817 * 120.00035 * 215.72719 * 4 3 2 7 7 N 1.31616 * 119.99830 * 23.01912 * 6 4 3 8 8 Si 1.86795 * 119.99921 * 203.02216 * 6 4 3 9 9 H 1.48497 * 109.47487 * 59.99815 * 8 6 4 10 10 H 1.48495 * 109.47111 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47239 * 299.99802 * 8 6 4 12 12 C 1.46502 * 120.00241 * 95.82924 * 3 2 1 13 13 C 1.50696 * 109.47238 * 269.99777 * 12 3 2 14 14 C 1.32832 * 124.72019 * 90.00149 * 13 12 3 15 15 C 1.44402 * 113.06909 * 180.28919 * 14 13 12 16 16 C 1.43206 * 123.44621 * 179.72840 * 15 14 13 17 17 N 6.69520 * 51.26701 * 62.96325 * 2 1 3 18 18 C 1.35946 * 113.09871 * 359.50425 * 15 14 13 19 19 S 1.70441 * 110.83128 * 0.47759 * 18 15 14 20 20 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47583 * 300.00425 * 1 2 3 22 22 H 1.09004 * 109.47229 * 60.00292 * 1 2 3 23 23 H 1.08999 * 109.47125 * 240.00185 * 2 1 3 24 24 H 1.09004 * 109.47229 * 119.99708 * 2 1 3 25 25 H 0.97008 * 120.00044 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47188 * 149.99772 * 12 3 2 27 27 H 1.08997 * 109.47156 * 30.00234 * 12 3 2 28 28 H 1.08001 * 123.45804 * 0.02562 * 14 13 12 29 29 H 1.08005 * 124.58282 * 180.20173 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1329 2.0669 -1.1798 5 1 1.4104 1.9113 -1.9672 6 6 3.1779 2.9620 -1.3637 7 7 4.2796 2.8423 -0.6536 8 14 3.0204 4.3365 -2.6188 9 1 1.8659 5.2007 -2.2644 10 1 4.2640 5.1480 -2.6228 11 1 2.8063 3.7531 -3.9675 12 6 2.3839 2.0289 1.2622 13 6 1.1767 2.7222 1.8392 14 6 0.3077 2.1603 2.6721 15 6 -0.7587 3.0519 3.0633 16 6 -1.8184 2.6739 3.9492 17 7 -2.6592 2.3741 4.6520 18 6 -0.6508 4.2882 2.5084 19 16 0.7229 4.3841 1.5040 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 5.0100 3.4676 -0.7823 26 1 3.1708 2.7609 1.0803 27 1 2.7423 1.2775 1.9657 28 1 0.3881 1.1402 3.0174 29 1 -1.3445 5.0987 2.6774 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092399152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:28 Heat of formation + Delta-G solvation = 61.404045 kcal Electronic energy + Delta-G solvation = -14221.123239 eV Core-core repulsion = 11850.107394 eV Total energy + Delta-G solvation = -2371.015845 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24527 -37.83034 -36.63263 -33.77573 -32.20596 -30.17036 -27.26970 -25.86570 -24.96431 -22.22551 -20.96571 -18.90710 -18.34846 -17.70777 -16.72018 -15.67489 -15.57512 -15.26648 -14.97502 -14.47703 -14.19833 -14.08578 -13.81474 -13.46157 -13.30583 -13.01020 -12.93449 -12.53238 -12.48929 -12.30662 -11.99338 -11.85731 -11.50522 -11.43184 -10.47148 -9.59935 -9.23729 -8.57162 -7.81852 -5.38459 -0.06454 0.75543 1.10995 1.19797 1.51438 1.55549 1.60434 1.69846 2.50315 2.56931 3.12057 3.28405 3.84644 4.00285 4.43624 4.49911 4.61813 4.77090 4.86514 4.91762 5.08893 5.14453 5.28995 5.35210 5.36873 5.64124 5.73247 5.79221 6.47103 6.49948 7.19578 7.87325 8.40483 9.15562 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.027468 B = 0.009096 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.117469 B = 3077.438254 C = 3646.275214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 N -0.588 5.588 4 C -0.260 4.260 5 H 0.052 0.948 6 C -0.020 4.020 7 N -0.910 5.910 8 Si 0.932 3.068 9 H -0.267 1.267 10 H -0.292 1.292 11 H -0.281 1.281 12 C 0.202 3.798 13 C -0.178 4.178 14 C -0.118 4.118 15 C -0.069 4.069 16 C 0.306 3.694 17 N -0.469 5.469 18 C -0.200 4.200 19 S 0.212 5.788 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.051 0.949 25 H 0.254 0.746 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.152 0.848 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 2.173 4.310 7.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.308 5.308 4 C -0.391 4.391 5 H 0.070 0.930 6 C -0.219 4.219 7 N -0.553 5.553 8 Si 0.760 3.240 9 H -0.193 1.193 10 H -0.218 1.218 11 H -0.207 1.207 12 C 0.074 3.926 13 C -0.298 4.298 14 C -0.148 4.148 15 C -0.088 4.088 16 C -0.010 4.010 17 N -0.147 5.147 18 C -0.342 4.342 19 S 0.479 5.521 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.169 0.831 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.876 2.899 4.462 7.927 hybrid contribution -0.268 -0.357 -0.161 0.474 sum -6.144 2.541 4.302 7.919 Atomic orbital electron populations 1.22199 0.97983 1.00526 1.00896 1.20982 0.93184 0.85441 0.99115 1.43968 1.75708 1.09295 1.01799 1.19065 1.05552 1.20210 0.94265 0.93049 1.25564 0.93818 1.02754 0.99720 1.70080 1.03837 1.37016 1.44349 0.85892 0.77301 0.80838 0.80010 1.19270 1.21822 1.20728 1.19494 0.91092 0.96252 0.85761 1.25736 1.04959 0.97747 1.01403 1.20890 0.93088 1.00366 1.00409 1.16197 0.94939 0.94997 1.02708 1.25181 0.91862 0.92159 0.91804 1.81214 1.11964 1.09320 1.12175 1.25779 1.05397 1.00773 1.02210 1.83567 1.16513 1.10499 1.41520 0.92038 0.93029 0.94852 0.94822 0.93020 0.93616 0.90056 0.92535 0.83052 0.78771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 10.20 71.98 0.73 -4.49 15 2 C 0.14 5.27 6.44 86.38 0.56 5.83 15 3 N -0.59 -26.17 2.43 -706.35 -1.72 -27.89 15 4 C -0.26 -12.95 9.46 84.03 0.79 -12.16 15 5 H 0.05 2.63 7.93 -2.91 -0.02 2.60 15 6 C -0.02 -1.02 4.93 84.86 0.42 -0.60 15 7 N -0.91 -48.22 11.44 21.65 0.25 -47.97 15 8 Si 0.93 40.69 29.61 68.60 2.03 42.72 15 9 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 10 H -0.29 -12.85 7.11 99.48 0.71 -12.14 15 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 12 C 0.20 8.32 5.79 85.63 0.50 8.81 15 13 C -0.18 -6.17 6.00 24.51 0.15 -6.02 15 14 C -0.12 -3.56 8.58 22.66 0.19 -3.37 15 15 C -0.07 -1.92 5.84 -20.99 -0.12 -2.04 15 16 C 0.31 8.88 15.62 88.33 1.38 10.26 15 17 N -0.47 -15.07 18.54 19.01 0.35 -14.72 15 18 C -0.20 -5.08 10.78 67.29 0.73 -4.35 15 19 S 0.21 6.59 23.00 -56.49 -1.30 5.29 15 20 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.05 1.69 6.38 -2.39 -0.02 1.67 15 22 H 0.03 1.19 8.14 -2.38 -0.02 1.18 15 23 H 0.03 1.35 8.09 -2.39 -0.02 1.33 15 24 H 0.05 1.79 7.83 -2.38 -0.02 1.77 15 25 H 0.25 13.16 8.31 -92.70 -0.77 12.39 15 26 H 0.08 3.86 5.45 -2.39 -0.01 3.84 15 27 H 0.06 2.19 7.85 -2.39 -0.02 2.17 15 28 H 0.15 4.21 8.04 -2.91 -0.02 4.19 15 29 H 0.20 3.65 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -54.49 274.20 6.09 -48.39 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.16 Total: 2.30 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 5.32 Total: -8.12 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -1.12 Total: -90.59 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -1.30 Total: 5.29 kcal Total: -54.49 6.09 -48.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.798 kcal (2) G-P(sol) polarization free energy of solvation -54.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds