Wall clock time and date at job start Sun Mar 29 2020 22:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00262 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00373 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99995 * 3 2 1 7 7 C 1.38642 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99799 * 359.97438 * 7 2 1 9 9 O 1.34808 * 119.99891 * 180.27750 * 7 2 1 10 10 C 1.35816 * 117.00053 * 179.72510 * 9 7 2 11 11 C 1.38995 * 120.05562 * 269.71991 * 10 9 7 12 12 F 1.35095 * 120.03596 * 0.02562 * 11 10 9 13 13 C 1.38500 * 119.92967 * 179.74419 * 11 10 9 14 14 F 1.35103 * 119.96371 * 180.27318 * 13 11 10 15 15 C 1.38466 * 120.06534 * 0.55730 * 13 11 10 16 16 C 1.38475 * 120.12233 * 359.69493 * 15 13 11 17 17 F 1.35104 * 119.96604 * 180.02562 * 16 15 13 18 18 C 1.38492 * 120.06192 * 0.02740 * 16 15 13 19 19 F 1.35105 * 120.02854 * 180.02562 * 18 16 15 20 20 H 0.97005 * 119.99955 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.93914 * 179.72333 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3570 -1.2007 0.0051 10 6 3.9735 -2.4109 0.0100 11 6 4.2897 -3.0261 1.2156 12 9 3.9837 -2.4213 2.3842 13 6 4.9137 -4.2626 1.2176 14 9 5.2164 -4.8638 2.3890 15 6 5.2329 -4.8805 0.0202 16 6 4.9237 -4.2674 -1.1822 17 9 5.2361 -4.8733 -2.3487 18 6 4.2946 -3.0336 -1.1903 19 9 3.9928 -2.4362 -2.3639 20 1 -0.4850 0.8401 0.0004 21 1 5.7235 -5.8427 0.0242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194250858.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:41 Heat of formation + Delta-G solvation = -173.831625 kcal Electronic energy + Delta-G solvation = -16445.876880 eV Core-core repulsion = 12788.464688 eV Total energy + Delta-G solvation = -3657.412192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.35691 -49.30477 -48.31711 -48.30242 -38.99394 -36.75154 -32.30508 -29.80259 -29.61186 -25.29295 -22.83204 -22.78100 -18.61837 -18.33101 -18.06637 -17.87293 -16.47975 -16.28724 -16.22349 -15.67646 -15.36915 -14.90138 -14.64110 -14.60055 -14.24819 -14.02198 -13.33021 -12.95823 -12.52374 -12.42056 -11.78085 -11.30704 -11.20610 -10.54853 -10.40183 -9.82567 -8.60325 -8.57814 -8.45891 -6.30531 -4.10663 0.71073 0.80593 3.02313 3.26121 3.29623 3.43576 3.48944 3.96778 4.03896 4.30942 4.53445 4.60374 4.64590 5.04302 5.40286 5.51767 5.73677 5.75778 6.06769 6.67812 7.58153 8.02985 9.01086 9.44471 10.78999 Molecular weight = 236.02amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.010103 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.635869 B = 2770.885369 C = 3430.536981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.092 0.908 9 O -0.245 6.245 10 C 0.137 3.863 11 C 0.063 3.937 12 F -0.106 7.106 13 C 0.093 3.907 14 F -0.120 7.120 15 C -0.161 4.161 16 C 0.093 3.907 17 F -0.120 7.120 18 C 0.063 3.937 19 F -0.106 7.106 20 H 0.277 0.723 21 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.133 -8.002 0.060 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.462 4.462 8 H 0.110 0.890 9 O -0.157 6.157 10 C 0.089 3.911 11 C 0.041 3.959 12 F -0.084 7.084 13 C 0.072 3.928 14 F -0.099 7.099 15 C -0.180 4.180 16 C 0.072 3.928 17 F -0.098 7.098 18 C 0.041 3.959 19 F -0.084 7.084 20 H 0.088 0.912 21 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.044 -7.682 0.064 12.645 hybrid contribution 0.174 0.598 -0.010 0.623 sum 10.218 -7.083 0.053 12.433 Atomic orbital electron populations 1.69643 1.05267 1.28116 1.50027 1.24254 0.94875 0.98390 0.95963 0.86228 0.80284 0.81845 0.78858 1.19934 1.20803 1.18467 1.20421 0.74940 0.96386 1.54487 0.88979 1.83602 1.22150 1.18056 1.91915 1.18294 0.95714 0.88561 0.88562 1.18033 1.03312 0.91460 0.83061 1.91565 1.90772 1.82346 1.43716 1.16992 1.02339 0.91333 0.82137 1.91543 1.91034 1.82557 1.44715 1.20576 1.05989 1.02954 0.88506 1.16990 1.02234 0.91343 0.82233 1.91544 1.90807 1.82334 1.45164 1.18027 1.03300 0.91596 0.82957 1.91568 1.90881 1.82687 1.43267 0.91245 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.48 0.77 -25.48 14 2 C 0.07 1.90 5.49 -17.51 -0.10 1.80 14 3 Si 0.90 22.07 28.62 -169.99 -4.86 17.21 14 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 14 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 14 6 H -0.26 -6.37 7.11 56.52 0.40 -5.97 14 7 C -0.39 -10.99 10.28 30.88 0.32 -10.67 14 8 H 0.09 2.72 7.99 -52.49 -0.42 2.31 14 9 O -0.24 -6.30 8.24 -0.09 0.00 -6.30 14 10 C 0.14 2.92 5.60 -39.02 -0.22 2.70 14 11 C 0.06 1.19 7.32 -39.20 -0.29 0.90 14 12 F -0.11 -2.18 17.02 2.25 0.04 -2.15 14 13 C 0.09 1.41 7.30 -39.40 -0.29 1.13 14 14 F -0.12 -1.76 17.18 2.25 0.04 -1.72 14 15 C -0.16 -2.09 10.00 -39.41 -0.39 -2.48 14 16 C 0.09 1.41 7.30 -39.40 -0.29 1.13 14 17 F -0.12 -1.75 17.18 2.25 0.04 -1.71 14 18 C 0.06 1.18 7.32 -39.21 -0.29 0.90 14 19 F -0.11 -2.18 17.02 2.25 0.04 -2.14 14 20 H 0.28 7.58 8.31 -40.82 -0.34 7.24 14 21 H 0.16 1.54 8.06 -52.48 -0.42 1.11 14 LS Contribution 225.51 15.07 3.40 3.40 Total: -1.00 -29.18 225.51 -2.06 -31.24 By element: Atomic # 1 Polarization: -7.76 SS G_CDS: 0.02 Total: -7.74 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.54 Total: -4.60 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.77 Total: -25.48 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: 0.00 Total: -6.30 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.15 Total: -7.72 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.18 -2.06 -31.24 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194250858.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.594 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds