Wall clock time and date at job start Sun Mar 29 2020 22:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00262 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00373 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99995 * 3 2 1 7 7 C 1.38642 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99799 * 359.97438 * 7 2 1 9 9 O 1.34808 * 119.99891 * 180.27750 * 7 2 1 10 10 C 1.35816 * 117.00053 * 179.72510 * 9 7 2 11 11 C 1.38995 * 120.05562 * 269.71991 * 10 9 7 12 12 F 1.35095 * 120.03596 * 0.02562 * 11 10 9 13 13 C 1.38500 * 119.92967 * 179.74419 * 11 10 9 14 14 F 1.35103 * 119.96371 * 180.27318 * 13 11 10 15 15 C 1.38466 * 120.06534 * 0.55730 * 13 11 10 16 16 C 1.38475 * 120.12233 * 359.69493 * 15 13 11 17 17 F 1.35104 * 119.96604 * 180.02562 * 16 15 13 18 18 C 1.38492 * 120.06192 * 0.02740 * 16 15 13 19 19 F 1.35105 * 120.02854 * 180.02562 * 18 16 15 20 20 H 0.97005 * 119.99955 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.93914 * 179.72333 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3570 -1.2007 0.0051 10 6 3.9735 -2.4109 0.0100 11 6 4.2897 -3.0261 1.2156 12 9 3.9837 -2.4213 2.3842 13 6 4.9137 -4.2626 1.2176 14 9 5.2164 -4.8638 2.3890 15 6 5.2329 -4.8805 0.0202 16 6 4.9237 -4.2674 -1.1822 17 9 5.2361 -4.8733 -2.3487 18 6 4.2946 -3.0336 -1.1903 19 9 3.9928 -2.4362 -2.3639 20 1 -0.4850 0.8401 0.0004 21 1 5.7235 -5.8427 0.0242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194250858.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:41 Heat of formation + Delta-G solvation = -191.884164 kcal Electronic energy + Delta-G solvation = -16446.659697 eV Core-core repulsion = 12788.464688 eV Total energy + Delta-G solvation = -3658.195008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.71489 -50.65842 -49.75246 -49.74161 -40.60955 -38.37412 -34.43138 -31.29216 -30.99801 -27.28219 -24.31520 -24.22323 -20.43832 -19.78775 -19.74442 -19.34479 -17.95303 -17.88347 -17.68329 -17.03392 -16.77294 -16.40350 -16.12739 -16.03226 -15.79451 -15.44628 -15.01693 -14.93113 -14.37895 -13.99744 -13.24248 -13.07584 -12.66846 -12.32779 -12.23162 -11.88812 -10.73011 -10.05943 -9.83562 -8.47001 -6.29487 -0.66945 -0.57848 1.31154 1.35132 1.50842 1.64814 2.08968 2.29687 2.58118 2.70087 2.87713 2.99303 3.25137 3.31139 4.09394 4.10348 4.29498 4.50521 4.66391 5.22050 5.42470 5.94278 6.84794 7.41889 8.66338 Molecular weight = 236.02amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.010103 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.635869 B = 2770.885369 C = 3430.536981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.386 4.386 8 H 0.061 0.939 9 O -0.265 6.265 10 C 0.091 3.909 11 C 0.047 3.953 12 F -0.123 7.123 13 C 0.113 3.887 14 F -0.109 7.109 15 C -0.115 4.115 16 C 0.113 3.887 17 F -0.109 7.109 18 C 0.048 3.952 19 F -0.122 7.122 20 H 0.283 0.717 21 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.103 -9.376 0.047 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.461 4.461 8 H 0.079 0.921 9 O -0.178 6.178 10 C 0.044 3.956 11 C 0.026 3.974 12 F -0.101 7.101 13 C 0.092 3.908 14 F -0.087 7.087 15 C -0.134 4.134 16 C 0.092 3.908 17 F -0.087 7.087 18 C 0.027 3.973 19 F -0.101 7.101 20 H 0.093 0.907 21 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 12.031 -9.079 0.050 15.073 hybrid contribution -0.358 0.785 -0.008 0.863 sum 11.673 -8.295 0.042 14.320 Atomic orbital electron populations 1.69733 1.06682 1.29363 1.51405 1.25107 0.95775 1.01846 0.95790 0.85282 0.78834 0.77819 0.79272 1.19060 1.19135 1.18746 1.20314 0.76649 0.95363 1.53819 0.92076 1.83545 1.20551 1.21163 1.92538 1.18568 0.97968 0.88842 0.90238 1.18193 1.04515 0.92885 0.81784 1.91513 1.91182 1.82986 1.44434 1.16869 1.01008 0.89698 0.83249 1.91586 1.90713 1.81998 1.44427 1.21024 1.02643 1.03659 0.86071 1.16866 1.00890 0.89714 0.83342 1.91587 1.90480 1.81771 1.44873 1.18179 1.04462 0.92995 0.81677 1.91518 1.91279 1.83309 1.43969 0.90702 0.76467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.96 21.61 0.30 -55.96 14 2 C 0.01 0.71 5.49 84.83 0.47 1.18 14 3 Si 0.97 46.13 28.62 68.60 1.96 48.09 14 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 14 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 14 6 H -0.26 -12.55 7.11 99.48 0.71 -11.84 14 7 C -0.39 -22.75 10.28 67.92 0.70 -22.05 14 8 H 0.06 3.84 7.99 -2.91 -0.02 3.81 14 9 O -0.26 -14.05 8.24 -23.25 -0.19 -14.24 14 10 C 0.09 3.92 5.60 22.63 0.13 4.05 14 11 C 0.05 1.77 7.32 22.51 0.16 1.94 14 12 F -0.12 -5.13 17.02 44.97 0.77 -4.36 14 13 C 0.11 3.07 7.30 22.39 0.16 3.23 14 14 F -0.11 -2.78 17.18 44.97 0.77 -2.00 14 15 C -0.12 -2.42 10.00 22.38 0.22 -2.19 14 16 C 0.11 3.07 7.30 22.39 0.16 3.23 14 17 F -0.11 -2.76 17.18 44.97 0.77 -1.99 14 18 C 0.05 1.79 7.32 22.51 0.16 1.96 14 19 F -0.12 -5.08 17.02 44.97 0.77 -4.32 14 20 H 0.28 15.77 8.31 -92.70 -0.77 15.00 14 21 H 0.22 2.39 8.06 -2.91 -0.02 2.36 14 Total: -1.00 -65.45 225.51 8.62 -56.82 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: 1.30 Total: -13.37 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 2.17 Total: -8.66 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.30 Total: -55.96 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.19 Total: -14.24 kcal Atomic # 9 Polarization: -15.75 SS G_CDS: 3.08 Total: -12.67 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.96 Total: 48.09 kcal Total: -65.45 8.62 -56.82 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194250858.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.063 kcal (2) G-P(sol) polarization free energy of solvation -65.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds