Wall clock time and date at job start Sun Mar 29 2020 22:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36948 * 119.99750 * 2 1 4 4 H 1.08005 * 120.00061 * 161.89611 * 3 2 1 5 5 C 1.38812 * 120.00220 * 342.17607 * 3 2 1 6 6 N 1.31558 * 119.99929 * 344.87545 * 5 3 2 7 7 Si 1.86797 * 120.00158 * 164.87672 * 5 3 2 8 8 H 1.48503 * 109.47066 * 89.99798 * 7 5 3 9 9 H 1.48489 * 109.47245 * 209.99749 * 7 5 3 10 10 H 1.48504 * 109.47057 * 330.00485 * 7 5 3 11 11 C 1.38469 * 120.00037 * 179.97438 * 2 1 3 12 12 N 1.32798 * 119.16422 * 180.02562 * 11 2 1 13 13 C 1.31603 * 121.46665 * 180.02562 * 12 11 2 14 14 C 1.41106 * 119.30958 * 359.97438 * 13 12 11 15 15 N 1.34441 * 129.97164 * 180.02562 * 14 13 12 16 16 C 1.28086 * 118.04415 * 179.97438 * 15 14 13 17 17 S 1.75858 * 110.51469 * 0.02562 * 16 15 14 18 18 C 1.40298 * 117.17368 * 0.02562 * 14 13 12 19 19 N 1.32194 * 119.16277 * 359.73324 * 11 2 1 20 20 H 1.08996 * 109.47332 * 84.92499 * 1 2 3 21 21 H 1.09006 * 109.47190 * 204.92131 * 1 2 3 22 22 H 1.08996 * 109.47309 * 324.91901 * 1 2 3 23 23 H 0.97000 * 120.00220 * 179.97438 * 6 5 3 24 24 H 1.08003 * 120.34267 * 180.02562 * 13 12 11 25 25 H 1.08001 * 124.74220 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1897 1.2092 0.2906 5 6 1.5056 2.3593 -0.3680 6 7 0.3496 2.3067 -0.9937 7 14 2.2803 4.0130 0.0253 8 1 3.1527 4.4313 -1.1013 9 1 1.2122 5.0247 0.2263 10 1 3.0922 3.8974 1.2633 11 6 2.1574 -1.1992 0.0005 12 7 3.4852 -1.1798 0.0010 13 6 4.1885 -2.2922 0.0011 14 6 3.5176 -3.5335 0.0011 15 7 4.0134 -4.7832 0.0016 16 6 3.1847 -5.7598 0.0020 17 16 1.5301 -5.1641 0.0010 18 6 2.1150 -3.5038 0.0005 19 7 1.4798 -2.3342 0.0064 20 1 -0.3634 0.0909 -1.0236 21 1 -0.3634 -0.9320 0.4331 22 1 -0.3634 0.8409 0.5906 23 1 -0.1007 3.1265 -1.2505 24 1 5.2679 -2.2552 0.0019 25 1 3.4632 -6.8033 0.0020 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260419810.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:25 Heat of formation + Delta-G solvation = 85.574201 kcal Electronic energy + Delta-G solvation = -13950.993810 eV Core-core repulsion = 11477.485718 eV Total energy + Delta-G solvation = -2473.508092 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 236.043 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.87790 -39.26942 -37.48214 -34.49973 -33.91371 -30.57856 -28.75007 -26.83600 -25.72345 -24.25921 -22.55949 -20.29806 -18.90654 -18.67857 -17.90444 -16.94290 -16.54088 -16.09763 -15.51166 -15.15643 -14.87265 -14.86412 -13.79357 -13.43644 -13.32279 -13.16127 -12.73491 -12.58086 -12.21128 -12.17690 -12.09789 -11.41779 -10.65124 -10.61142 -9.74125 -9.67044 -9.02509 -8.57383 -5.95486 -0.40274 0.20174 0.27241 0.94748 1.36764 1.40439 1.54180 1.62654 2.03824 2.46594 2.69064 3.14936 3.29688 3.52947 3.81610 4.12091 4.40435 4.56929 4.79792 4.98792 5.09584 5.23500 5.34495 5.70640 6.10275 6.27762 6.76083 6.89873 7.09139 7.65271 8.40141 Molecular weight = 236.04amu Principal moments of inertia in cm(-1) A = 0.054364 B = 0.006742 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.925733 B = 4152.149558 C = 4612.069809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.138 3.862 2 N -0.383 5.383 3 C -0.316 4.316 4 H 0.110 0.890 5 C -0.006 4.006 6 N -0.878 5.878 7 Si 1.011 2.989 8 H -0.269 1.269 9 H -0.269 1.269 10 H -0.261 1.261 11 C 0.469 3.531 12 N -0.566 5.566 13 C 0.265 3.735 14 C -0.175 4.175 15 N -0.432 5.432 16 C 0.062 3.938 17 S 0.067 5.933 18 C 0.113 3.887 19 N -0.591 5.591 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.284 0.716 24 H 0.200 0.800 25 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -8.621 1.993 9.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.070 5.070 3 C -0.446 4.446 4 H 0.127 0.873 5 C -0.211 4.211 6 N -0.512 5.512 7 Si 0.831 3.169 8 H -0.194 1.194 9 H -0.193 1.193 10 H -0.185 1.185 11 C 0.114 3.886 12 N -0.287 5.287 13 C 0.080 3.920 14 C -0.304 4.304 15 N -0.142 5.142 16 C -0.247 4.247 17 S 0.308 5.692 18 C -0.151 4.151 19 N -0.324 5.324 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.216 0.784 25 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.376 -7.660 1.907 8.013 hybrid contribution 0.777 0.819 -0.090 1.133 sum 2.153 -6.841 1.817 7.399 Atomic orbital electron populations 1.21427 0.77505 0.99912 1.01644 1.42783 1.06193 1.01320 1.56745 1.20282 0.98318 0.82604 1.43390 0.87251 1.26486 0.96788 1.03753 0.94114 1.70208 1.16537 1.31289 1.33152 0.84670 0.78016 0.74880 0.79286 1.19374 1.19308 1.18521 1.19257 0.85505 0.85931 0.97908 1.67691 1.07255 1.30989 1.22739 1.23113 1.00741 0.83311 0.84850 1.20306 0.91618 0.94089 1.24420 1.65770 1.37720 0.97791 1.12960 1.29409 0.87702 1.03019 1.04531 1.84536 1.13570 0.92954 1.78093 1.24834 0.94108 0.98682 0.97449 1.67140 1.39261 0.95960 1.30038 0.93071 0.92456 0.91453 0.90631 0.78380 0.73000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.74 8.75 127.77 1.12 7.85 15 2 N -0.38 -20.23 3.12 -547.71 -1.71 -21.94 15 3 C -0.32 -16.64 9.36 84.03 0.79 -15.86 15 4 H 0.11 5.77 7.25 -2.91 -0.02 5.75 15 5 C -0.01 -0.30 5.07 84.87 0.43 0.14 15 6 N -0.88 -44.20 10.53 21.65 0.23 -43.97 15 7 Si 1.01 38.49 29.58 68.60 2.03 40.51 15 8 H -0.27 -10.05 7.11 99.48 0.71 -9.35 15 9 H -0.27 -9.73 7.11 99.48 0.71 -9.02 15 10 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 11 C 0.47 24.14 8.14 261.45 2.13 26.26 15 12 N -0.57 -27.16 9.12 -196.35 -1.79 -28.95 15 13 C 0.26 10.64 11.38 85.43 0.97 11.61 15 14 C -0.17 -6.95 7.02 39.95 0.28 -6.67 15 15 N -0.43 -14.29 10.55 -190.31 -2.01 -16.30 15 16 C 0.06 1.57 12.40 130.79 1.62 3.19 15 17 S 0.07 2.03 23.39 -56.49 -1.32 0.71 15 18 C 0.11 4.79 7.75 85.00 0.66 5.45 15 19 N -0.59 -28.86 9.05 -193.64 -1.75 -30.61 15 20 H 0.05 2.60 7.47 -2.39 -0.02 2.58 15 21 H 0.06 2.64 7.17 -2.38 -0.02 2.62 15 22 H 0.07 3.25 7.04 -2.39 -0.02 3.23 15 23 H 0.28 13.17 8.31 -92.71 -0.77 12.40 15 24 H 0.20 6.20 8.06 -2.91 -0.02 6.17 15 25 H 0.25 3.35 8.06 -2.91 -0.02 3.33 15 Total: -1.00 -62.79 239.88 2.90 -59.88 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.23 Total: 8.68 kcal Atomic # 6 Polarization: 23.98 SS G_CDS: 8.00 Total: 31.98 kcal Atomic # 7 Polarization: -134.74 SS G_CDS: -7.03 Total: -141.77 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -62.79 2.90 -59.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260419810.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.456 kcal (2) G-P(sol) polarization free energy of solvation -62.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds