Wall clock time and date at job start Sun Mar 29 2020 22:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00157 * 2 1 4 4 H 1.48499 * 109.47186 * 240.00128 * 3 2 1 5 5 H 1.48498 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46695 * 119.99995 * 3 2 1 7 7 C 1.37877 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00011 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99932 * 359.97438 * 7 2 1 10 10 O 1.42892 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.35958 * 117.00296 * 180.02562 * 10 9 7 12 12 C 1.38842 * 119.94756 * 359.97438 * 11 10 9 13 13 C 1.38105 * 120.15835 * 179.97438 * 12 11 10 14 14 C 1.38566 * 119.95785 * 0.02562 * 13 12 11 15 15 O 1.35760 * 132.94603 * 179.97438 * 14 13 12 16 16 C 1.34274 * 108.27813 * 180.02562 * 15 14 13 17 17 O 1.21514 * 125.36107 * 179.73875 * 16 15 14 18 18 O 1.34283 * 109.27179 * 0.02562 * 16 15 14 19 19 C 1.35688 * 108.29847 * 359.97438 * 18 16 15 20 20 C 1.38537 * 132.96642 * 179.97438 * 19 18 16 21 21 H 0.97008 * 119.99758 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46804 * 59.99947 * 9 7 2 23 23 H 1.08995 * 109.46877 * 300.00407 * 9 7 2 24 24 H 1.08001 * 119.91874 * 0.02562 * 12 11 10 25 25 H 1.07998 * 120.02045 * 180.02562 * 13 12 11 26 26 H 1.08000 * 120.07467 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.6598 -4.8417 -0.0011 12 6 0.2832 -5.0224 -0.0011 13 6 -0.2493 -6.2966 -0.0021 14 6 0.5916 -7.3980 -0.0027 15 8 0.3630 -8.7362 -0.0033 16 6 1.5489 -9.3660 -0.0031 17 8 1.7052 -10.5710 0.0010 18 8 2.5349 -8.4543 -0.0018 19 6 1.9731 -7.2192 -0.0018 20 6 2.5049 -5.9400 -0.0003 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 -0.3727 -4.1644 -0.0010 25 1 -1.3204 -6.4346 -0.0025 26 1 3.5756 -5.7990 0.0008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442553082.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:54 Heat of formation + Delta-G solvation = -106.404670 kcal Electronic energy + Delta-G solvation = -15613.128001 eV Core-core repulsion = 12623.956707 eV Total energy + Delta-G solvation = -2989.171294 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.96096 -39.57191 -38.21479 -37.89950 -36.18435 -33.08801 -30.99479 -29.19113 -27.65653 -24.26875 -23.96597 -23.12732 -22.59359 -19.05930 -18.18954 -18.17461 -17.53121 -16.68903 -15.82569 -15.27040 -15.02292 -15.00433 -14.52406 -14.19996 -14.10981 -13.47526 -13.07652 -12.91881 -12.15569 -11.74171 -11.67821 -11.17888 -11.06261 -11.03108 -10.37383 -10.28503 -9.51678 -9.01077 -8.73219 -7.90280 -6.40581 -4.45460 0.91109 1.10118 1.95769 2.02339 2.39201 3.17265 3.21243 3.23635 3.48455 3.90616 4.16619 4.28979 4.59957 4.88225 4.97467 5.12278 5.26186 5.65930 5.84438 5.88386 6.16803 6.39326 6.60768 6.88510 6.92093 7.03946 7.48323 7.73576 8.09646 8.64171 9.20733 10.70316 Molecular weight = 236.06amu Principal moments of inertia in cm(-1) A = 0.081364 B = 0.004650 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.050703 B = 6019.737662 C = 6348.643989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.072 0.928 9 C 0.189 3.811 10 O -0.302 6.302 11 C 0.184 3.816 12 C -0.188 4.188 13 C -0.028 4.028 14 C -0.051 4.051 15 O -0.235 6.235 16 C 0.591 3.409 17 O -0.429 6.429 18 O -0.237 6.237 19 C 0.055 3.945 20 C -0.132 4.132 21 H 0.270 0.730 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.160 0.840 25 H 0.146 0.854 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -9.361 -0.011 9.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.117 3.883 10 O -0.214 6.214 11 C 0.134 3.866 12 C -0.206 4.206 13 C -0.047 4.047 14 C -0.094 4.094 15 O -0.149 6.149 16 C 0.399 3.601 17 O -0.321 6.321 18 O -0.150 6.150 19 C 0.011 3.989 20 C -0.151 4.151 21 H 0.079 0.921 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.178 0.822 25 H 0.164 0.836 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.048 -9.837 -0.009 9.837 hybrid contribution 0.120 0.686 -0.002 0.696 sum 0.071 -9.151 -0.010 9.151 Atomic orbital electron populations 1.69919 1.06139 1.28047 1.48949 1.24926 0.95089 0.99616 0.94383 0.86264 0.79286 0.81162 0.79097 1.19762 1.20915 1.19768 1.20893 0.94373 0.88421 1.53085 0.90952 1.20858 0.88646 0.81359 0.97437 1.86200 1.39309 1.11040 1.84812 1.18709 0.90718 0.86687 0.90486 1.21484 0.95090 0.97452 1.06613 1.19797 0.99590 0.87427 0.97881 1.19350 0.93649 0.81740 1.14698 1.85189 1.31373 1.17850 1.80469 1.21443 0.76597 0.86415 0.75647 1.91263 1.81461 1.06190 1.53206 1.85205 1.34795 1.14930 1.80066 1.18988 0.89776 0.84971 1.05174 1.18923 1.01491 0.85024 1.09643 0.92053 0.95400 0.95412 0.82243 0.83641 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.29 55.43 0.74 -23.22 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.92 19.94 29.54 -169.99 -5.02 14.92 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 15 7 C -0.53 -13.82 9.43 -34.44 -0.32 -14.15 15 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 15 9 C 0.19 4.39 4.49 36.01 0.16 4.55 15 10 O -0.30 -6.23 10.12 -19.61 -0.20 -6.43 15 11 C 0.18 3.09 6.68 -39.23 -0.26 2.83 15 12 C -0.19 -2.79 9.03 -39.41 -0.36 -3.15 15 13 C -0.03 -0.36 10.06 -39.51 -0.40 -0.76 15 14 C -0.05 -0.72 7.35 -39.07 -0.29 -1.01 15 15 O -0.24 -3.40 10.79 -31.21 -0.34 -3.74 15 16 C 0.59 8.91 9.66 101.05 0.98 9.89 15 17 O -0.43 -7.20 18.04 -27.23 -0.49 -7.69 15 18 O -0.24 -3.50 10.79 -31.01 -0.33 -3.83 15 19 C 0.06 0.80 7.34 -39.08 -0.29 0.52 15 20 C -0.13 -1.96 10.00 -39.35 -0.39 -2.35 15 21 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 22 H 0.03 0.66 7.66 -51.93 -0.40 0.26 15 23 H 0.03 0.66 7.66 -51.93 -0.40 0.26 15 24 H 0.16 2.40 6.28 -52.49 -0.33 2.07 15 25 H 0.15 1.44 8.06 -52.49 -0.42 1.02 15 26 H 0.15 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 247.22 15.07 3.73 3.73 Total: -1.00 -27.10 247.22 -4.70 -31.80 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: -1.52 Total: -3.43 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.27 Total: -2.10 kcal Atomic # 7 Polarization: -23.96 SS G_CDS: 0.74 Total: -23.22 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.36 Total: -21.69 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.10 -4.70 -31.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442553082.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.605 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds