Wall clock time and date at job start Sun Mar 29 2020 22:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00157 * 2 1 4 4 H 1.48499 * 109.47186 * 240.00128 * 3 2 1 5 5 H 1.48498 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46695 * 119.99995 * 3 2 1 7 7 C 1.37877 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00011 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99932 * 359.97438 * 7 2 1 10 10 O 1.42892 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.35958 * 117.00296 * 180.02562 * 10 9 7 12 12 C 1.38842 * 119.94756 * 359.97438 * 11 10 9 13 13 C 1.38105 * 120.15835 * 179.97438 * 12 11 10 14 14 C 1.38566 * 119.95785 * 0.02562 * 13 12 11 15 15 O 1.35760 * 132.94603 * 179.97438 * 14 13 12 16 16 C 1.34274 * 108.27813 * 180.02562 * 15 14 13 17 17 O 1.21514 * 125.36107 * 179.73875 * 16 15 14 18 18 O 1.34283 * 109.27179 * 0.02562 * 16 15 14 19 19 C 1.35688 * 108.29847 * 359.97438 * 18 16 15 20 20 C 1.38537 * 132.96642 * 179.97438 * 19 18 16 21 21 H 0.97008 * 119.99758 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46804 * 59.99947 * 9 7 2 23 23 H 1.08995 * 109.46877 * 300.00407 * 9 7 2 24 24 H 1.08001 * 119.91874 * 0.02562 * 12 11 10 25 25 H 1.07998 * 120.02045 * 180.02562 * 13 12 11 26 26 H 1.08000 * 120.07467 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.6598 -4.8417 -0.0011 12 6 0.2832 -5.0224 -0.0011 13 6 -0.2493 -6.2966 -0.0021 14 6 0.5916 -7.3980 -0.0027 15 8 0.3630 -8.7362 -0.0033 16 6 1.5489 -9.3660 -0.0031 17 8 1.7052 -10.5710 0.0010 18 8 2.5349 -8.4543 -0.0018 19 6 1.9731 -7.2192 -0.0018 20 6 2.5049 -5.9400 -0.0003 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 -0.3727 -4.1644 -0.0010 25 1 -1.3204 -6.4346 -0.0025 26 1 3.5756 -5.7990 0.0008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442553082.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:53 Heat of formation + Delta-G solvation = -120.957321 kcal Electronic energy + Delta-G solvation = -15613.759052 eV Core-core repulsion = 12623.956707 eV Total energy + Delta-G solvation = -2989.802344 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.16778 -40.92860 -39.53209 -39.09844 -37.54477 -35.01095 -32.22375 -30.56742 -29.36500 -25.76357 -25.20813 -24.33894 -24.15240 -20.39085 -19.39945 -19.39755 -19.07770 -18.27270 -17.24361 -16.87146 -16.57233 -16.22872 -16.11699 -15.39168 -15.21077 -14.77248 -14.59356 -14.21965 -13.76543 -13.27553 -13.03836 -12.91888 -12.69164 -12.45413 -12.07244 -11.78408 -11.37168 -10.67703 -10.15436 -9.23922 -8.36612 -6.48839 -0.26465 -0.12122 0.74952 0.79427 1.17693 1.44951 1.46859 1.55398 2.27706 2.28249 2.65537 2.99829 3.01707 3.38170 3.69263 3.93385 4.11123 4.41196 4.64526 4.73478 4.80317 5.02806 5.05758 5.17344 5.53545 5.70599 5.83505 5.85202 6.43739 6.71816 7.22219 8.74400 Molecular weight = 236.06amu Principal moments of inertia in cm(-1) A = 0.081364 B = 0.004650 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.050703 B = 6019.737662 C = 6348.643989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.204 3.796 10 O -0.321 6.321 11 C 0.156 3.844 12 C -0.185 4.185 13 C -0.011 4.011 14 C -0.045 4.045 15 O -0.229 6.229 16 C 0.598 3.402 17 O -0.446 6.446 18 O -0.235 6.235 19 C 0.050 3.950 20 C -0.122 4.122 21 H 0.274 0.726 22 H 0.019 0.981 23 H 0.018 0.982 24 H 0.157 0.843 25 H 0.183 0.817 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -9.522 -0.012 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.131 3.869 10 O -0.234 6.234 11 C 0.108 3.892 12 C -0.204 4.204 13 C -0.029 4.029 14 C -0.088 4.088 15 O -0.143 6.143 16 C 0.407 3.593 17 O -0.340 6.340 18 O -0.148 6.148 19 C 0.006 3.994 20 C -0.141 4.141 21 H 0.083 0.917 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.174 0.826 25 H 0.200 0.800 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.210 -10.022 -0.010 10.024 hybrid contribution 0.146 0.595 -0.001 0.612 sum -0.063 -9.428 -0.011 9.428 Atomic orbital electron populations 1.70002 1.07404 1.29048 1.49432 1.25787 0.95938 1.02891 0.93687 0.85285 0.78165 0.77038 0.79318 1.19165 1.20188 1.19177 1.21278 0.94509 0.90195 1.53599 0.91492 1.20433 0.88373 0.81680 0.96386 1.86115 1.38940 1.12030 1.86270 1.18905 0.91968 0.85604 0.92733 1.21496 0.94221 0.98351 1.06323 1.20040 1.01219 0.85871 0.95734 1.19544 0.93587 0.81862 1.13843 1.85201 1.30967 1.17866 1.80226 1.21323 0.76628 0.86173 0.75202 1.91257 1.81727 1.06960 1.54016 1.85204 1.34727 1.14940 1.79938 1.18964 0.90102 0.84777 1.05526 1.18915 1.01996 0.84613 1.08620 0.91749 0.96363 0.96379 0.82586 0.80018 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.52 13.29 21.45 0.28 -49.24 15 2 C 0.02 0.89 5.46 84.65 0.46 1.36 15 3 Si 0.98 40.45 29.54 68.60 2.03 42.48 15 4 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 5 H -0.28 -11.04 7.11 99.48 0.71 -10.34 15 6 H -0.27 -10.72 7.11 99.48 0.71 -10.02 15 7 C -0.56 -29.46 9.43 25.60 0.24 -29.22 15 8 H 0.07 3.50 7.81 -2.91 -0.02 3.48 15 9 C 0.20 9.66 4.49 71.24 0.32 9.98 15 10 O -0.32 -13.40 10.12 -93.08 -0.94 -14.34 15 11 C 0.16 5.16 6.68 22.50 0.15 5.31 15 12 C -0.19 -5.30 9.03 22.38 0.20 -5.10 15 13 C -0.01 -0.24 10.06 22.32 0.22 -0.02 15 14 C -0.05 -1.16 7.35 22.60 0.17 -0.99 15 15 O -0.23 -6.06 10.79 13.99 0.15 -5.91 15 16 C 0.60 16.97 9.66 113.37 1.10 18.06 15 17 O -0.45 -14.34 18.04 27.40 0.49 -13.85 15 18 O -0.24 -6.54 10.79 14.71 0.16 -6.38 15 19 C 0.05 1.38 7.34 22.60 0.17 1.54 15 20 C -0.12 -3.51 10.00 22.42 0.22 -3.28 15 21 H 0.27 13.79 8.31 -92.70 -0.77 13.02 15 22 H 0.02 0.89 7.66 -2.39 -0.02 0.88 15 23 H 0.02 0.89 7.66 -2.39 -0.02 0.87 15 24 H 0.16 4.62 6.28 -2.91 -0.02 4.61 15 25 H 0.18 2.87 8.06 -2.91 -0.02 2.84 15 26 H 0.16 4.19 8.06 -2.91 -0.02 4.16 15 Total: -1.00 -56.75 247.22 6.65 -50.10 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: 1.23 Total: -0.51 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 3.25 Total: -2.34 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.28 Total: -49.24 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.14 Total: -40.49 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -56.75 6.65 -50.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442553082.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.862 kcal (2) G-P(sol) polarization free energy of solvation -56.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds