Wall clock time and date at job start Sun Mar 29 2020 21:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47114 * 119.99975 * 2 1 4 4 C 1.32872 * 120.00102 * 185.31964 * 3 2 1 5 5 C 1.50699 * 119.99650 * 6.23778 * 4 3 2 6 6 C 1.53003 * 109.47299 * 126.12734 * 5 4 3 7 7 N 1.46901 * 109.47408 * 179.97438 * 6 5 4 8 8 C 1.46842 * 110.99930 * 66.04900 * 7 6 5 9 9 C 1.53038 * 109.52471 * 185.84127 * 8 7 6 10 10 C 1.53120 * 109.30472 * 300.79889 * 9 8 7 11 11 C 1.53199 * 109.11990 * 57.63528 * 10 9 8 12 12 H 1.09007 * 109.49305 * 62.31749 * 11 10 9 13 13 C 1.50695 * 109.49321 * 182.41807 * 11 10 9 14 14 H 1.08009 * 119.99943 * 119.82124 * 13 11 10 15 15 C 1.37874 * 120.00559 * 299.82271 * 13 11 10 16 16 N 1.31521 * 119.99735 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00467 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47026 * 90.00035 * 17 15 13 19 19 H 1.48503 * 109.47127 * 210.00399 * 17 15 13 20 20 H 1.48504 * 109.46949 * 330.00162 * 17 15 13 21 21 C 1.46847 * 110.99618 * 190.25405 * 7 6 5 22 22 H 1.07993 * 120.00507 * 180.02562 * 1 2 3 23 23 H 1.08004 * 119.99858 * 359.97438 * 1 2 3 24 24 H 1.08000 * 119.99669 * 180.02562 * 2 1 3 25 25 H 1.08003 * 120.00279 * 5.31582 * 3 2 1 26 26 H 1.08003 * 120.00263 * 186.24205 * 4 3 2 27 27 H 1.09004 * 109.47516 * 6.13094 * 5 4 3 28 28 H 1.08997 * 109.47453 * 246.12280 * 5 4 3 29 29 H 1.09001 * 109.47262 * 59.99683 * 6 5 4 30 30 H 1.09006 * 109.47261 * 300.00282 * 6 5 4 31 31 H 1.08998 * 109.47045 * 65.81930 * 8 7 6 32 32 H 1.09008 * 109.45315 * 305.84817 * 8 7 6 33 33 H 1.09005 * 109.50165 * 60.75786 * 9 8 7 34 34 H 1.08994 * 109.50618 * 180.83712 * 9 8 7 35 35 H 1.09002 * 109.51882 * 177.57715 * 10 9 8 36 36 H 1.08994 * 109.52483 * 297.76325 * 10 9 8 37 37 H 0.97003 * 119.99966 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.46521 * 294.17678 * 21 7 6 39 39 H 1.08996 * 109.46343 * 54.15622 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3887 1.2766 -0.1067 5 6 4.1259 -0.0115 -0.3685 6 6 5.0213 0.1542 -1.5981 7 7 5.7404 -1.1011 -1.8529 8 6 4.8113 -2.1707 -2.2391 9 6 5.5731 -3.4930 -2.3543 10 6 6.6794 -3.3501 -3.4033 11 6 7.6053 -2.1973 -3.0023 12 1 8.0801 -2.4271 -2.0483 13 6 8.6629 -2.0107 -4.0594 14 1 8.7422 -1.0698 -4.5838 15 6 9.5292 -3.0410 -4.3574 16 7 9.4324 -4.1869 -3.7193 17 14 10.8397 -2.8099 -5.6683 18 1 12.0781 -2.2808 -5.0424 19 1 11.1300 -4.1155 -6.3136 20 1 10.3528 -1.8496 -6.6911 21 6 6.7845 -0.9126 -2.8682 22 1 -0.5400 -0.9352 0.0004 23 1 -0.5400 0.9354 0.0004 24 1 1.8686 -0.9353 -0.0004 25 1 1.5278 2.2074 0.0867 26 1 3.9369 2.2016 -0.0057 27 1 3.4075 -0.8115 -0.5475 28 1 4.7397 -0.2612 0.4968 29 1 5.7398 0.9542 -1.4192 30 1 4.4075 0.4040 -2.4636 31 1 4.3573 -1.9282 -3.1998 32 1 4.0321 -2.2653 -1.4827 33 1 6.0159 -3.7431 -1.3902 34 1 4.8861 -4.2838 -2.6554 35 1 7.2517 -4.2762 -3.4575 36 1 6.2344 -3.1384 -4.3755 37 1 10.0417 -4.9120 -3.9292 38 1 6.3213 -0.6760 -3.8260 39 1 7.4385 -0.0936 -2.5689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713645886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:08 Heat of formation + Delta-G solvation = 22.160653 kcal Electronic energy + Delta-G solvation = -16502.567231 eV Core-core repulsion = 14024.188893 eV Total energy + Delta-G solvation = -2478.378338 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.41315 -36.42804 -33.96768 -32.36172 -31.10613 -29.86354 -27.92888 -24.94265 -23.66532 -21.90519 -21.62664 -20.72646 -18.63363 -18.24211 -16.39833 -15.78569 -15.27653 -14.79605 -14.35179 -14.16573 -13.52880 -13.21694 -12.90988 -12.52300 -12.45530 -12.40629 -11.86822 -11.72871 -11.38700 -11.07746 -10.93736 -10.77857 -10.70199 -10.60389 -10.34409 -10.00493 -9.80834 -9.43867 -8.99619 -8.67429 -8.37189 -8.27353 -7.62438 -5.95052 -4.01131 1.29751 3.02103 3.32386 3.38974 3.42019 4.39383 4.54674 4.75613 4.98392 5.18727 5.24950 5.35004 5.50914 5.57805 5.63371 5.74314 5.83746 5.86505 6.03851 6.11360 6.24585 6.30011 6.37408 6.46056 6.47347 6.54685 6.61445 6.75221 6.78845 6.86710 7.00520 7.25383 7.43458 7.70845 7.78136 7.86776 8.11491 8.20266 8.51110 9.02951 9.62995 11.10964 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.051998 B = 0.004606 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.357500 B = 6077.032963 C = 6415.825686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.154 4.154 4 C -0.125 4.125 5 C -0.100 4.100 6 C 0.061 3.939 7 N -0.539 5.539 8 C 0.061 3.939 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.054 3.946 12 H 0.034 0.966 13 C -0.515 4.515 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.068 3.932 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.029 0.971 37 H 0.259 0.741 38 H 0.018 0.982 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.210 7.004 6.107 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.142 4.142 3 C -0.172 4.172 4 C -0.143 4.143 5 C -0.137 4.137 6 C -0.067 4.067 7 N -0.264 5.264 8 C -0.067 4.067 9 C -0.156 4.156 10 C -0.148 4.148 11 C 0.035 3.965 12 H 0.052 0.948 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.059 4.059 22 H 0.117 0.883 23 H 0.113 0.887 24 H 0.136 0.864 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.890 6.681 6.535 15.921 hybrid contribution 0.288 0.417 -1.513 1.595 sum -12.602 7.098 5.022 15.310 Atomic orbital electron populations 1.24307 0.95684 1.01666 1.01210 1.22159 0.95356 0.97320 0.99384 1.21832 0.94722 0.96513 1.04093 1.23494 0.94982 0.99140 0.96710 1.20900 0.98520 0.95162 0.99149 1.21965 0.95856 0.93157 0.95724 1.62004 1.13187 1.04882 1.46288 1.22066 0.94234 0.92952 0.97419 1.21679 0.98264 0.94319 1.01289 1.21661 0.94909 1.03685 0.94585 1.18681 0.91902 0.88697 0.97170 0.94757 1.21159 1.14652 0.98961 1.20558 0.92880 1.24937 0.97352 0.95276 0.96301 1.69900 1.37675 1.03506 1.41651 0.86629 0.82177 0.77379 0.81991 1.20712 1.21284 1.20036 1.22304 0.92043 1.01170 0.90376 0.88322 0.88687 0.86429 0.87100 0.86919 0.90791 0.90062 0.91175 0.95639 0.96042 0.92370 0.92112 0.93631 0.89153 0.95225 0.93089 0.96395 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 14.43 28.88 0.42 -1.35 16 2 C -0.12 -1.32 9.21 -37.83 -0.35 -1.67 16 3 C -0.15 -1.63 9.83 -37.83 -0.37 -2.00 16 4 C -0.12 -1.38 9.59 -36.16 -0.35 -1.73 16 5 C -0.10 -1.29 5.37 -27.88 -0.15 -1.44 16 6 C 0.06 0.94 4.94 -3.82 -0.02 0.92 16 7 N -0.54 -10.10 4.66 -234.67 -1.09 -11.19 16 8 C 0.06 1.10 5.29 -3.84 -0.02 1.08 16 9 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 10 C -0.11 -2.65 5.03 -26.57 -0.13 -2.78 16 11 C 0.05 1.38 2.26 -91.65 -0.21 1.17 16 12 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.51 -14.25 8.56 -34.44 -0.29 -14.54 16 14 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.52 11.36 55.43 0.63 -24.89 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.07 1.47 4.68 -3.83 -0.02 1.45 16 22 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 23 H 0.09 0.77 8.05 -52.48 -0.42 0.35 16 24 H 0.12 1.26 5.99 -52.49 -0.31 0.95 16 25 H 0.11 1.01 8.06 -52.48 -0.42 0.59 16 26 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 27 H 0.07 0.95 3.70 -51.93 -0.19 0.76 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 30 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.91 6.22 -51.92 -0.32 0.58 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 1.25 8.01 -51.93 -0.42 0.83 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -28.27 308.95 -9.17 -37.44 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.59 Total: -0.62 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -1.75 Total: -21.74 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.46 Total: -36.08 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.27 -9.17 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713645886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.601 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds