Wall clock time and date at job start Sun Mar 29 2020 22:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 119.99648 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00367 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00117 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99828 * 3 2 1 7 7 C 1.38754 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 0.02562 * 7 2 1 9 9 O 1.34924 * 119.99738 * 179.97438 * 7 2 1 10 10 C 1.34313 * 117.00019 * 180.02562 * 9 7 2 11 11 O 1.21207 * 119.99598 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99841 * 179.97438 * 10 9 7 13 13 H 1.08999 * 112.51235 * 309.67186 * 12 10 9 14 14 C 1.52883 * 113.16606 * 179.83799 * 12 10 9 15 15 C 1.51605 * 84.68485 * 244.78083 * 14 12 10 16 16 C 1.38960 * 145.50552 * 179.97438 * 15 14 12 17 17 C 1.37937 * 120.35557 * 179.97438 * 16 15 14 18 18 C 1.38459 * 120.15472 * 0.02562 * 17 16 15 19 19 F 1.35095 * 120.15662 * 179.97438 * 18 17 16 20 20 C 1.38410 * 119.69265 * 0.02562 * 18 17 16 21 21 C 1.38198 * 120.10166 * 359.97099 * 20 18 17 22 22 H 0.96996 * 120.00358 * 359.97438 * 1 2 3 23 23 H 1.09003 * 113.98468 * 358.72942 * 14 12 10 24 24 H 1.08996 * 113.99146 * 130.82931 * 14 12 10 25 25 H 1.08001 * 119.82239 * 359.97438 * 16 15 14 26 26 H 1.08004 * 119.92337 * 180.02562 * 17 16 15 27 27 H 1.07994 * 119.94621 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0465 1.4000 5 1 3.5459 1.4401 -0.7001 6 1 1.4458 2.6527 -0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3574 -1.2016 0.0000 10 6 3.9672 -2.3984 0.0000 11 8 3.3070 -3.4149 0.0001 12 6 5.4721 -2.4771 -0.0011 13 1 5.9219 -1.8574 -0.7768 14 6 5.9992 -3.9122 0.0031 15 6 6.5558 -3.5542 1.3670 16 6 7.2754 -4.0084 2.4656 17 6 7.5115 -3.1736 3.5380 18 6 7.0316 -1.8748 3.5271 19 9 7.2623 -1.0573 4.5776 20 6 6.3135 -1.4183 2.4355 21 6 6.0776 -2.2557 1.3617 22 1 -0.4850 0.8400 0.0004 23 1 5.2174 -4.6714 0.0284 24 1 6.7625 -4.1062 -0.7505 25 1 7.6519 -5.0206 2.4799 26 1 8.0719 -3.5338 4.3880 27 1 5.9369 -0.4063 2.4229 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796076072.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:36 Heat of formation + Delta-G solvation = -58.578424 kcal Electronic energy + Delta-G solvation = -15839.529472 eV Core-core repulsion = 12864.804869 eV Total energy + Delta-G solvation = -2974.724603 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.064 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.85528 -40.78824 -38.79089 -35.80886 -34.58039 -32.33972 -30.83898 -27.69372 -26.14871 -24.45003 -22.45395 -21.04243 -19.38718 -18.02273 -17.46040 -16.93189 -16.46368 -15.57933 -15.25249 -15.14866 -14.76759 -14.05112 -13.98024 -13.59367 -12.99813 -12.83610 -12.39293 -11.93972 -11.74963 -11.62106 -11.42141 -11.21217 -10.62334 -10.43136 -10.40183 -9.74251 -9.46377 -8.87455 -8.71428 -8.40190 -6.40512 -4.16295 1.10413 1.21780 3.02352 3.21567 3.26906 3.35228 3.54409 3.98803 4.04008 4.22120 4.29706 4.48013 4.67262 4.95138 5.08430 5.29040 5.40320 5.54488 5.66513 5.77151 5.94643 6.07421 6.13880 6.19136 6.32960 6.67257 6.88558 7.68163 7.99851 8.55121 8.97252 9.62622 10.67750 Molecular weight = 236.06amu Principal moments of inertia in cm(-1) A = 0.026585 B = 0.007875 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.991348 B = 3554.766840 C = 4271.400755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.259 1.259 6 H -0.281 1.281 7 C -0.382 4.382 8 H 0.110 0.890 9 O -0.245 6.245 10 C 0.420 3.580 11 O -0.532 6.532 12 C -0.030 4.030 13 H 0.123 0.877 14 C -0.056 4.056 15 C -0.127 4.127 16 C -0.074 4.074 17 C -0.150 4.150 18 C 0.096 3.904 19 F -0.139 7.139 20 C -0.114 4.114 21 C -0.087 4.087 22 H 0.280 0.720 23 H 0.117 0.883 24 H 0.103 0.897 25 H 0.129 0.871 26 H 0.137 0.863 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.048 -3.809 3.117 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.206 1.206 7 C -0.458 4.458 8 H 0.128 0.872 9 O -0.153 6.153 10 C 0.265 3.735 11 O -0.427 6.427 12 C -0.049 4.049 13 H 0.140 0.860 14 C -0.093 4.093 15 C -0.127 4.127 16 C -0.092 4.092 17 C -0.169 4.169 18 C 0.077 3.923 19 F -0.117 7.117 20 C -0.133 4.133 21 C -0.087 4.087 22 H 0.090 0.910 23 H 0.135 0.865 24 H 0.121 0.879 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.678 -3.889 3.170 16.461 hybrid contribution 0.166 1.059 0.344 1.126 sum 15.844 -2.830 3.514 16.474 Atomic orbital electron populations 1.69602 1.05708 1.28488 1.47305 1.24543 0.95001 0.98671 0.95444 0.86249 0.80370 0.81536 0.79050 1.19773 1.18307 1.20638 1.20672 0.76048 0.97027 1.52032 0.87230 1.83512 1.24036 1.31134 1.76645 1.22279 0.89317 0.82845 0.79018 1.90593 1.66290 1.36250 1.49598 1.20863 0.90932 0.98601 0.94551 0.85955 1.21814 0.99739 0.96053 0.91669 1.22503 0.97680 0.95941 0.96619 1.20301 0.97806 0.99607 0.91518 1.20904 1.03283 0.92447 1.00216 1.17301 1.00821 0.89005 0.85217 1.91493 1.92950 1.72192 1.55081 1.20155 0.99860 1.01494 0.91759 1.21093 0.97309 0.95009 0.95322 0.90955 0.86517 0.87901 0.85287 0.84540 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.96 55.48 0.77 -25.06 15 2 C 0.07 1.94 5.49 -17.53 -0.10 1.84 15 3 Si 0.90 21.40 28.62 -169.99 -4.86 16.53 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 5 H -0.26 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.38 -11.38 10.10 30.92 0.31 -11.07 15 8 H 0.11 3.59 7.09 -52.49 -0.37 3.22 15 9 O -0.25 -6.48 8.58 -20.72 -0.18 -6.65 15 10 C 0.42 9.80 7.40 36.00 0.27 10.06 15 11 O -0.53 -13.86 14.90 -19.05 -0.28 -14.15 15 12 C -0.03 -0.51 4.25 -96.56 -0.41 -0.92 15 13 H 0.12 1.73 8.14 -51.93 -0.42 1.30 15 14 C -0.06 -0.77 7.92 -27.50 -0.22 -0.99 15 15 C -0.13 -1.82 7.32 -107.46 -0.79 -2.60 15 16 C -0.07 -0.90 10.04 -39.42 -0.40 -1.30 15 17 C -0.15 -1.84 10.01 -39.61 -0.40 -2.23 15 18 C 0.10 1.38 7.31 -39.44 -0.29 1.10 15 19 F -0.14 -2.01 17.27 2.25 0.04 -1.97 15 20 C -0.11 -1.82 10.02 -39.53 -0.40 -2.21 15 21 C -0.09 -1.43 7.05 -104.55 -0.74 -2.17 15 22 H 0.28 7.57 8.31 -40.82 -0.34 7.23 15 23 H 0.12 1.76 7.02 -51.93 -0.36 1.40 15 24 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.13 1.18 8.06 -52.49 -0.42 0.75 15 26 H 0.14 1.29 8.06 -52.48 -0.42 0.87 15 27 H 0.14 2.13 8.06 -52.49 -0.42 1.71 15 LS Contribution 254.44 15.07 3.83 3.83 Total: -1.00 -32.56 254.44 -5.81 -38.37 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -1.99 Total: -0.42 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.15 Total: -10.50 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.77 Total: -25.06 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.46 Total: -20.80 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.53 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.56 -5.81 -38.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796076072.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.204 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds