Wall clock time and date at job start Sun Mar 29 2020 22:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36291 * 126.27999 * 2 1 4 4 N 1.30214 * 109.98802 * 179.97438 * 3 2 1 5 5 C 1.35339 * 109.46363 * 0.02562 * 4 3 2 6 6 C 1.37224 * 126.28516 * 179.97438 * 2 1 3 7 7 N 1.32816 * 134.95000 * 0.02867 * 6 2 1 8 8 C 1.31725 * 120.66487 * 179.97438 * 7 6 2 9 9 N 1.31941 * 122.50019 * 0.02562 * 8 7 6 10 10 C 1.33052 * 121.18950 * 359.95056 * 9 8 7 11 11 S 1.76199 * 120.78832 * 180.02562 * 10 9 8 12 12 C 1.76203 * 99.99960 * 0.04806 * 11 10 9 13 13 H 1.07996 * 119.99557 * 359.97438 * 12 11 10 14 14 C 1.38778 * 119.99804 * 179.97438 * 12 11 10 15 15 N 1.31555 * 120.00669 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99712 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47370 * 89.99853 * 16 14 12 18 18 H 1.48507 * 109.47162 * 210.00073 * 16 14 12 19 19 H 1.48501 * 109.47244 * 330.00067 * 16 14 12 20 20 H 1.09006 * 109.47054 * 90.02317 * 1 2 3 21 21 H 1.08998 * 109.47116 * 210.01824 * 1 2 3 22 22 H 1.09003 * 109.47099 * 330.02563 * 1 2 3 23 23 H 1.07994 * 125.00569 * 0.27099 * 3 2 1 24 24 H 1.07999 * 118.75303 * 179.97438 * 8 7 6 25 25 H 0.96996 * 120.00601 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2714 1.0987 0.0000 4 7 3.5213 0.7334 0.0005 5 6 3.5962 -0.6179 0.0004 6 6 2.2771 -1.1061 0.0005 7 7 2.0747 -2.4188 0.0006 8 6 3.0921 -3.2554 0.0006 9 7 4.3465 -2.8462 0.0011 10 6 4.6485 -1.5504 0.0005 11 16 6.3273 -1.0156 0.0004 12 6 7.1455 -2.5761 -0.0003 13 1 6.5679 -3.4886 -0.0001 14 6 8.5322 -2.6325 -0.0011 15 7 9.2359 -1.5210 -0.0019 16 14 9.3996 -4.2869 -0.0011 17 1 9.6286 -4.7258 -1.4011 18 1 10.7038 -4.1621 0.6982 19 1 8.5560 -5.2882 0.6997 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 -0.8898 0.5141 22 1 -0.3633 0.8902 0.5134 23 1 1.9250 2.1215 0.0042 24 1 2.8920 -4.3167 0.0012 25 1 10.2050 -1.5604 -0.0028 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871701756.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:22 Heat of formation + Delta-G solvation = 74.713036 kcal Electronic energy + Delta-G solvation = -13690.394078 eV Core-core repulsion = 11216.415010 eV Total energy + Delta-G solvation = -2473.979068 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 236.043 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.35044 -39.94025 -35.46330 -34.76734 -33.78953 -31.04513 -28.16449 -27.82706 -25.65306 -24.42762 -22.21122 -20.01276 -19.10173 -18.94315 -17.51069 -17.18249 -16.97136 -15.79449 -15.70022 -15.02928 -14.99902 -14.61913 -13.56623 -13.48163 -13.27452 -13.01645 -12.88355 -12.57018 -12.50891 -11.99049 -11.32749 -11.26185 -10.82011 -10.22726 -10.05892 -9.86773 -8.72828 -8.51575 -6.29854 -0.34498 0.31053 1.10295 1.39438 1.42052 1.43965 1.55642 1.83433 2.14008 2.81601 2.96451 2.97923 3.22455 3.27527 3.67399 3.93818 4.07054 4.19195 4.48506 4.74904 4.82952 5.03108 5.45729 5.55213 5.86890 6.22982 6.29119 6.77856 6.95101 7.26762 8.57449 Molecular weight = 236.04amu Principal moments of inertia in cm(-1) A = 0.050262 B = 0.006983 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.946924 B = 4009.060375 C = 4550.863797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.477 5.477 3 C 0.272 3.728 4 N -0.508 5.508 5 C -0.084 4.084 6 C 0.269 3.731 7 N -0.556 5.556 8 C 0.319 3.681 9 N -0.560 5.560 10 C 0.177 3.823 11 S 0.115 5.885 12 C -0.565 4.565 13 H 0.102 0.898 14 C 0.026 3.974 15 N -0.904 5.904 16 Si 1.001 2.999 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.263 1.263 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.131 0.869 23 H 0.281 0.719 24 H 0.230 0.770 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 3.071 0.086 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.171 5.171 3 C -0.015 4.015 4 N -0.227 5.227 5 C -0.214 4.214 6 C 0.024 3.976 7 N -0.282 5.282 8 C 0.025 3.975 9 N -0.284 5.284 10 C -0.084 4.084 11 S 0.363 5.637 12 C -0.713 4.713 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.539 5.539 16 Si 0.822 3.178 17 H -0.190 1.190 18 H -0.194 1.194 19 H -0.187 1.187 20 H 0.107 0.893 21 H 0.099 0.901 22 H 0.149 0.851 23 H 0.296 0.704 24 H 0.246 0.754 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.150 3.885 0.092 15.641 hybrid contribution -0.313 -1.694 -0.031 1.723 sum -15.464 2.191 0.061 15.618 Atomic orbital electron populations 1.22366 0.72280 1.06453 1.05021 1.45312 1.09240 1.02879 1.59632 1.26628 0.83344 0.94627 0.96924 1.70197 1.21256 1.09604 1.21651 1.19874 0.94078 0.92819 1.14632 1.19201 0.89244 0.89360 0.99773 1.67320 1.37149 0.99657 1.24071 1.25329 0.81902 1.00652 0.89604 1.68856 1.23236 1.14210 1.22132 1.23865 1.00817 0.90492 0.93217 1.83785 0.87981 1.12619 1.79309 1.23719 0.94463 0.94460 1.58688 0.87970 1.26157 0.96804 1.02551 0.92449 1.70045 1.08093 1.29327 1.46431 0.84910 0.77187 0.76606 0.79080 1.19021 1.19444 1.18684 0.89346 0.90110 0.85083 0.70363 0.75383 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 11.18 127.77 1.43 2.46 15 2 N -0.48 -12.27 3.19 -549.36 -1.75 -14.03 15 3 C 0.27 6.75 12.51 179.94 2.25 9.00 15 4 N -0.51 -19.65 11.27 -191.29 -2.16 -21.81 15 5 C -0.08 -3.72 7.08 39.77 0.28 -3.44 15 6 C 0.27 10.09 8.06 133.91 1.08 11.17 15 7 N -0.56 -20.73 10.46 -197.83 -2.07 -22.80 15 8 C 0.32 12.29 12.25 180.86 2.22 14.51 15 9 N -0.56 -26.72 8.62 -195.38 -1.68 -28.41 15 10 C 0.18 8.95 7.04 85.08 0.60 9.55 15 11 S 0.11 6.43 21.69 -56.49 -1.23 5.21 15 12 C -0.57 -33.01 9.28 67.95 0.63 -32.38 15 13 H 0.10 5.96 6.59 -2.91 -0.02 5.94 15 14 C 0.03 1.48 5.49 84.86 0.47 1.95 15 15 N -0.90 -52.70 13.22 21.64 0.29 -52.42 15 16 Si 1.00 43.74 29.55 68.60 2.03 45.76 15 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 19 H -0.26 -11.21 7.11 99.48 0.71 -10.51 15 20 H 0.09 0.95 8.14 -2.38 -0.02 0.93 15 21 H 0.08 1.22 8.14 -2.39 -0.02 1.20 15 22 H 0.13 0.61 8.14 -2.39 -0.02 0.59 15 23 H 0.28 2.86 8.06 -2.91 -0.02 2.84 15 24 H 0.23 6.58 8.06 -2.91 -0.02 6.56 15 25 H 0.28 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -78.34 247.67 3.60 -74.74 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: 1.23 Total: 0.93 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 8.95 Total: 12.83 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -7.38 Total: -139.46 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 6.43 SS G_CDS: -1.23 Total: 5.21 kcal Total: -78.34 3.60 -74.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871701756.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.449 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds