Wall clock time and date at job start Sun Mar 29 2020 22:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53120 * 109.51975 * 319.40761 * 3 2 1 5 5 C 1.53045 * 109.27382 * 177.56208 * 4 3 2 6 6 N 1.46844 * 109.52143 * 300.82250 * 5 4 3 7 7 C 1.46906 * 110.99887 * 185.83959 * 6 5 4 8 8 C 1.53000 * 109.47072 * 170.00138 * 7 6 5 9 9 H 1.08998 * 109.47666 * 54.99810 * 8 7 6 10 10 C 1.53005 * 109.46913 * 294.99925 * 8 7 6 11 11 C 1.52998 * 109.46937 * 175.00313 * 8 7 6 12 12 C 1.50707 * 109.47006 * 184.99877 * 11 8 7 13 13 H 1.07996 * 119.99871 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99966 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99911 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99820 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46945 * 90.00756 * 16 14 12 18 18 H 1.48501 * 109.46889 * 210.00379 * 16 14 12 19 19 H 1.48499 * 109.47189 * 330.00137 * 16 14 12 20 20 C 1.46853 * 111.20068 * 61.74346 * 6 5 4 21 21 C 1.53033 * 109.52262 * 298.25891 * 20 6 5 22 22 H 4.44829 * 5.63030 * 180.02562 * 4 1 2 23 23 H 1.08999 * 109.51710 * 199.28324 * 3 2 1 24 24 H 1.08996 * 109.49890 * 57.62681 * 4 3 2 25 25 H 1.08989 * 109.54077 * 297.52042 * 4 3 2 26 26 H 1.09000 * 109.46052 * 180.80838 * 5 4 3 27 27 H 1.08998 * 109.45499 * 60.82968 * 5 4 3 28 28 H 1.08993 * 109.47164 * 289.99991 * 7 6 5 29 29 H 1.08996 * 109.46920 * 50.00025 * 7 6 5 30 30 H 1.08995 * 109.47281 * 60.00455 * 10 8 7 31 31 H 1.09000 * 109.46871 * 179.97438 * 10 8 7 32 32 H 1.08999 * 109.47528 * 300.00033 * 10 8 7 33 33 H 1.09002 * 109.46907 * 304.99730 * 11 8 7 34 34 H 1.09002 * 109.47546 * 64.99887 * 11 8 7 35 35 H 0.96993 * 119.99901 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46125 * 58.27453 * 20 6 5 37 37 H 1.09003 * 109.46462 * 178.23846 * 20 6 5 38 38 H 1.09007 * 109.50330 * 299.23709 * 21 20 6 39 39 H 1.08999 * 109.53502 * 179.13924 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1581 -1.0950 0.9390 5 6 4.6874 -1.1297 0.8884 6 7 5.1269 -1.3943 -0.4875 7 6 6.5838 -1.5719 -0.5498 8 6 6.9759 -2.0878 -1.9358 9 1 6.5874 -1.4126 -2.6982 10 6 6.3885 -3.4850 -2.1449 11 6 8.5007 -2.1544 -2.0426 12 6 8.8895 -2.5445 -3.4454 13 1 8.1254 -2.7262 -4.1867 14 6 10.2206 -2.6683 -3.7827 15 7 11.1511 -2.4465 -2.8800 16 14 10.7024 -3.1525 -5.5213 17 1 10.8629 -1.9301 -6.3490 18 1 11.9849 -3.9005 -5.4894 19 1 9.6427 -4.0118 -6.1075 20 6 4.6870 -0.3306 -1.3994 21 6 3.1578 -0.2721 -1.4170 22 1 -1.0499 -0.0003 0.0000 23 1 3.0097 0.9705 0.3393 24 1 2.7616 -2.0598 0.6228 25 1 2.8325 -0.8838 1.9575 26 1 5.0547 -1.9183 1.5450 27 1 5.0834 -0.1690 1.2177 28 1 7.0745 -0.6163 -0.3656 29 1 6.8947 -2.2918 0.2072 30 1 5.3022 -3.4376 -2.0688 31 1 6.6675 -3.8523 -3.1325 32 1 6.7770 -4.1604 -1.3826 33 1 8.9244 -1.1784 -1.8062 34 1 8.8821 -2.8958 -1.3404 35 1 12.0875 -2.5332 -3.1174 36 1 5.0832 0.6262 -1.0593 37 1 5.0541 -0.5389 -2.4044 38 1 2.7612 -1.2240 -1.7702 39 1 2.8314 0.5274 -2.0821 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877606921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:36 Heat of formation + Delta-G solvation = 28.694662 kcal Electronic energy + Delta-G solvation = -16543.896560 eV Core-core repulsion = 14065.801558 eV Total energy + Delta-G solvation = -2478.095002 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.20464 -36.00976 -33.89279 -32.19745 -30.98657 -30.72909 -26.94244 -26.07757 -23.94589 -23.13487 -22.12376 -19.97420 -18.76126 -18.22822 -16.42313 -15.62803 -14.91196 -14.81566 -14.48294 -14.30700 -13.77932 -13.52647 -13.40198 -12.55486 -12.19797 -12.15538 -11.60976 -11.43438 -11.26990 -11.16355 -11.04043 -10.86593 -10.81258 -10.66293 -10.26494 -10.22058 -10.08738 -10.01127 -9.53015 -9.09696 -8.91967 -8.30535 -7.97691 -5.95617 -3.96526 2.71730 2.74234 3.34357 3.40708 3.44226 4.12964 4.20839 4.50308 4.81574 4.87346 5.09388 5.23721 5.40078 5.41087 5.50525 5.59014 5.65733 5.69847 5.87390 5.88546 5.93849 6.06679 6.11298 6.14741 6.22937 6.32354 6.44269 6.59349 6.74160 7.05113 7.18587 7.24597 7.43717 7.47519 7.51680 7.72197 7.88445 8.04983 8.49227 9.09985 9.66770 11.15977 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.050662 B = 0.004485 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.547044 B = 6241.146923 C = 6490.371783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.170 4.170 3 C 0.016 3.984 4 C -0.105 4.105 5 C 0.055 3.945 6 N -0.535 5.535 7 C 0.061 3.939 8 C -0.082 4.082 9 H 0.056 0.944 10 C -0.122 4.122 11 C 0.027 3.973 12 C -0.511 4.511 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.052 3.948 21 C -0.105 4.105 22 H 0.215 0.785 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.012 0.988 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.031 0.969 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.594 4.389 6.769 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.170 4.170 3 C -0.002 4.002 4 C -0.142 4.142 5 C -0.073 4.073 6 N -0.260 5.260 7 C -0.066 4.066 8 C -0.100 4.100 9 H 0.074 0.926 10 C -0.180 4.180 11 C -0.011 4.011 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.076 4.076 21 C -0.143 4.143 22 H 0.232 0.768 23 H 0.105 0.895 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.607 3.943 6.648 18.318 hybrid contribution 0.589 0.558 -0.630 1.027 sum -16.018 4.501 6.018 17.693 Atomic orbital electron populations 1.24838 0.95856 1.01718 1.01420 1.23168 0.94312 0.99707 0.99822 1.18445 0.84149 1.00057 0.97554 1.21593 0.95385 0.98840 0.98422 1.22066 0.94501 0.99875 0.90896 1.61971 1.14262 1.43759 1.05988 1.22309 0.84810 0.99325 1.00162 1.21236 0.99142 0.96479 0.93172 0.92571 1.21576 0.98672 0.96510 1.01194 1.19129 0.88087 0.96868 0.96983 1.21242 0.91563 1.45905 0.96256 0.92581 1.25022 0.96813 0.95720 0.97019 1.69967 1.00162 1.50140 1.33470 0.86635 0.77915 0.78561 0.85147 1.20785 1.21329 1.19873 1.22138 0.94127 0.92580 0.98713 1.21608 0.95549 1.02614 0.94521 0.76826 0.89527 0.90677 0.91557 0.90521 0.95139 0.95350 0.91269 0.93917 0.92855 0.94243 0.96992 0.96597 0.93130 0.95097 0.89409 0.90663 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.22 19.25 29.55 0.57 -1.65 16 2 C -0.17 -1.95 12.57 -37.12 -0.47 -2.41 16 3 C 0.02 0.18 2.63 -93.28 -0.25 -0.07 16 4 C -0.10 -1.14 5.33 -26.65 -0.14 -1.29 16 5 C 0.05 0.67 5.46 -3.83 -0.02 0.65 16 6 N -0.54 -7.86 4.11 -234.66 -0.96 -8.83 16 7 C 0.06 1.05 4.35 -3.82 -0.02 1.04 16 8 C -0.08 -1.66 2.26 -90.62 -0.20 -1.87 16 9 H 0.06 1.16 6.22 -51.93 -0.32 0.84 16 10 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 11 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 12 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 13 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.05 0.71 5.30 -3.83 -0.02 0.69 16 21 C -0.11 -1.24 5.33 -26.66 -0.14 -1.38 16 22 H 0.21 1.38 7.80 -54.10 -0.42 0.96 16 23 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.64 8.14 -51.94 -0.42 0.21 16 26 H 0.08 0.91 8.02 -51.93 -0.42 0.50 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.07 1.19 7.99 -51.93 -0.41 0.78 16 30 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 31 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.31 6.12 -51.93 -0.32 0.99 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -29.94 313.70 -8.20 -38.15 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.81 Total: -3.51 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -0.87 Total: -20.94 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.23 Total: -35.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.94 -8.20 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877606921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.841 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds