Wall clock time and date at job start Sun Mar 29 2020 22:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53120 * 109.51975 * 319.40761 * 3 2 1 5 5 C 1.53045 * 109.27382 * 177.56208 * 4 3 2 6 6 N 1.46844 * 109.52143 * 300.82250 * 5 4 3 7 7 C 1.46906 * 110.99887 * 185.83959 * 6 5 4 8 8 C 1.53000 * 109.47072 * 170.00138 * 7 6 5 9 9 H 1.08998 * 109.47666 * 54.99810 * 8 7 6 10 10 C 1.53005 * 109.46913 * 294.99925 * 8 7 6 11 11 C 1.52998 * 109.46937 * 175.00313 * 8 7 6 12 12 C 1.50707 * 109.47006 * 184.99877 * 11 8 7 13 13 H 1.07996 * 119.99871 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99966 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99911 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99820 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46945 * 90.00756 * 16 14 12 18 18 H 1.48501 * 109.46889 * 210.00379 * 16 14 12 19 19 H 1.48499 * 109.47189 * 330.00137 * 16 14 12 20 20 C 1.46853 * 111.20068 * 61.74346 * 6 5 4 21 21 C 1.53033 * 109.52262 * 298.25891 * 20 6 5 22 22 H 4.44829 * 5.63030 * 180.02562 * 4 1 2 23 23 H 1.08999 * 109.51710 * 199.28324 * 3 2 1 24 24 H 1.08996 * 109.49890 * 57.62681 * 4 3 2 25 25 H 1.08989 * 109.54077 * 297.52042 * 4 3 2 26 26 H 1.09000 * 109.46052 * 180.80838 * 5 4 3 27 27 H 1.08998 * 109.45499 * 60.82968 * 5 4 3 28 28 H 1.08993 * 109.47164 * 289.99991 * 7 6 5 29 29 H 1.08996 * 109.46920 * 50.00025 * 7 6 5 30 30 H 1.08995 * 109.47281 * 60.00455 * 10 8 7 31 31 H 1.09000 * 109.46871 * 179.97438 * 10 8 7 32 32 H 1.08999 * 109.47528 * 300.00033 * 10 8 7 33 33 H 1.09002 * 109.46907 * 304.99730 * 11 8 7 34 34 H 1.09002 * 109.47546 * 64.99887 * 11 8 7 35 35 H 0.96993 * 119.99901 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46125 * 58.27453 * 20 6 5 37 37 H 1.09003 * 109.46462 * 178.23846 * 20 6 5 38 38 H 1.09007 * 109.50330 * 299.23709 * 21 20 6 39 39 H 1.08999 * 109.53502 * 179.13924 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1581 -1.0950 0.9390 5 6 4.6874 -1.1297 0.8884 6 7 5.1269 -1.3943 -0.4875 7 6 6.5838 -1.5719 -0.5498 8 6 6.9759 -2.0878 -1.9358 9 1 6.5874 -1.4126 -2.6982 10 6 6.3885 -3.4850 -2.1449 11 6 8.5007 -2.1544 -2.0426 12 6 8.8895 -2.5445 -3.4454 13 1 8.1254 -2.7262 -4.1867 14 6 10.2206 -2.6683 -3.7827 15 7 11.1511 -2.4465 -2.8800 16 14 10.7024 -3.1525 -5.5213 17 1 10.8629 -1.9301 -6.3490 18 1 11.9849 -3.9005 -5.4894 19 1 9.6427 -4.0118 -6.1075 20 6 4.6870 -0.3306 -1.3994 21 6 3.1578 -0.2721 -1.4170 22 1 -1.0499 -0.0003 0.0000 23 1 3.0097 0.9705 0.3393 24 1 2.7616 -2.0598 0.6228 25 1 2.8325 -0.8838 1.9575 26 1 5.0547 -1.9183 1.5450 27 1 5.0834 -0.1690 1.2177 28 1 7.0745 -0.6163 -0.3656 29 1 6.8947 -2.2918 0.2072 30 1 5.3022 -3.4376 -2.0688 31 1 6.6675 -3.8523 -3.1325 32 1 6.7770 -4.1604 -1.3826 33 1 8.9244 -1.1784 -1.8062 34 1 8.8821 -2.8958 -1.3404 35 1 12.0875 -2.5332 -3.1174 36 1 5.0832 0.6262 -1.0593 37 1 5.0541 -0.5389 -2.4044 38 1 2.7612 -1.2240 -1.7702 39 1 2.8314 0.5274 -2.0821 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877606921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:36 Heat of formation + Delta-G solvation = 12.392770 kcal Electronic energy + Delta-G solvation = -16544.603463 eV Core-core repulsion = 14065.801558 eV Total energy + Delta-G solvation = -2478.801905 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30059 -37.43537 -35.35125 -33.96680 -32.05190 -31.78233 -28.89007 -27.44083 -25.53239 -24.15536 -23.69768 -21.01329 -20.38954 -19.01580 -18.49708 -16.92248 -16.40359 -16.11756 -15.74874 -15.55702 -14.96975 -14.77945 -14.62771 -14.24210 -13.94347 -13.34229 -13.18805 -12.95513 -12.77553 -12.58188 -12.33716 -12.21285 -12.14083 -12.06681 -11.85597 -11.82425 -11.36709 -11.07196 -10.96485 -10.85214 -10.74861 -10.51333 -9.17871 -8.16272 -6.25145 1.40881 1.41821 1.52946 1.92201 1.95519 2.42968 2.98630 3.17184 3.43313 3.89264 3.90034 4.16673 4.18844 4.29608 4.38328 4.47512 4.55832 4.58900 4.68639 4.73270 4.86982 4.92214 4.97991 5.02229 5.04725 5.12278 5.18886 5.28153 5.30916 5.40596 5.49835 5.52577 5.58308 5.83086 5.91021 6.15152 6.27838 6.34552 6.74756 6.90933 7.43033 8.95835 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.050662 B = 0.004485 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.547044 B = 6241.146923 C = 6490.371783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.209 4.209 3 C 0.019 3.981 4 C -0.096 4.096 5 C 0.054 3.946 6 N -0.539 5.539 7 C 0.073 3.927 8 C -0.073 4.073 9 H 0.054 0.946 10 C -0.111 4.111 11 C 0.033 3.967 12 C -0.528 4.528 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.960 3.040 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.052 3.948 21 C -0.097 4.097 22 H 0.245 0.755 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.020 0.980 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.036 0.964 33 H -0.015 1.015 34 H -0.010 1.010 35 H 0.262 0.738 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 4.482 6.500 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.209 4.209 3 C 0.000 4.000 4 C -0.134 4.134 5 C -0.074 4.074 6 N -0.263 5.263 7 C -0.055 4.055 8 C -0.092 4.092 9 H 0.073 0.927 10 C -0.169 4.169 11 C -0.005 4.005 12 C -0.566 4.566 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.785 3.215 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.076 4.076 21 C -0.135 4.135 22 H 0.261 0.739 23 H 0.111 0.889 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.003 0.997 34 H 0.009 0.991 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.556 4.039 6.381 20.034 hybrid contribution 1.139 0.556 -0.507 1.365 sum -17.417 4.595 5.875 18.947 Atomic orbital electron populations 1.25658 0.96739 1.00107 0.99669 1.23380 0.94842 1.01246 1.01447 1.18376 0.84500 1.00301 0.96775 1.21527 0.93959 0.98500 0.99437 1.22149 0.95611 1.00325 0.89317 1.61927 1.12027 1.44620 1.07761 1.22022 0.86834 0.98726 0.97915 1.21043 0.95412 0.97410 0.95294 0.92731 1.21458 0.99870 0.95517 1.00019 1.19012 0.91665 0.94332 0.95445 1.21641 0.91978 1.45629 0.97335 0.92183 1.25944 0.96870 0.95651 1.01489 1.70101 1.00566 1.51220 1.35780 0.85518 0.77701 0.78513 0.79764 1.19910 1.20944 1.18764 1.22146 0.95561 0.92296 0.97602 1.21519 0.93793 1.02568 0.95578 0.73885 0.88950 0.91453 0.89858 0.90079 0.94591 0.96152 0.91281 0.91741 0.94536 0.94502 0.99670 0.99131 0.92965 0.94847 0.90970 0.91500 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.54 19.25 74.32 1.43 -2.10 16 2 C -0.21 -4.33 12.57 31.13 0.39 -3.94 16 3 C 0.02 0.38 2.63 -12.52 -0.03 0.34 16 4 C -0.10 -1.92 5.33 30.65 0.16 -1.76 16 5 C 0.05 1.24 5.46 86.33 0.47 1.71 16 6 N -0.54 -15.32 4.11 -896.34 -3.68 -19.01 16 7 C 0.07 2.52 4.35 86.30 0.38 2.89 16 8 C -0.07 -3.01 2.26 -10.79 -0.02 -3.03 16 9 H 0.05 2.27 6.22 -2.39 -0.01 2.26 16 10 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 11 C 0.03 1.75 4.45 29.85 0.13 1.88 16 12 C -0.53 -30.08 8.41 25.60 0.22 -29.87 16 13 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 14 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 15 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 16 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 20 C 0.05 1.37 5.30 86.32 0.46 1.83 16 21 C -0.10 -2.15 5.33 30.64 0.16 -1.98 16 22 H 0.24 2.26 7.80 -4.42 -0.03 2.22 16 23 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.80 8.02 -2.39 -0.02 1.78 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 29 H 0.07 2.38 7.99 -2.39 -0.02 2.36 16 30 H 0.06 2.20 7.75 -2.39 -0.02 2.19 16 31 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 2.13 6.12 -2.39 -0.01 2.11 16 38 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.27 313.70 4.45 -59.82 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.98 Total: 7.06 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.85 Total: -37.38 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -3.40 Total: -76.30 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.27 4.45 -59.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877606921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.208 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds