Wall clock time and date at job start Sun Mar 29 2020 21:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46778 * 184.61216 * 3 2 1 5 5 N 1.46905 * 109.46883 * 54.43499 * 4 3 2 6 6 C 1.46902 * 110.99853 * 62.62609 * 5 4 3 7 7 C 1.52999 * 109.46917 * 185.48921 * 6 5 4 8 8 C 1.50702 * 109.47092 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99813 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00055 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99838 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99867 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47165 * 90.00168 * 12 10 8 14 14 H 1.48499 * 109.46881 * 210.00076 * 12 10 8 15 15 H 1.48501 * 109.47193 * 330.00102 * 12 10 8 16 16 C 1.53004 * 109.47170 * 294.43672 * 4 3 2 17 17 C 1.52999 * 109.46877 * 180.02562 * 16 4 3 18 18 C 1.52998 * 109.47299 * 59.99966 * 17 16 4 19 19 C 1.53004 * 109.47184 * 299.99846 * 18 17 16 20 20 C 1.52998 * 109.47039 * 174.43617 * 4 3 2 21 21 H 4.44648 * 5.63348 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47218 * 64.61988 * 3 2 1 23 23 H 1.08995 * 109.47283 * 304.60897 * 3 2 1 24 24 H 1.00896 * 110.99949 * 298.66927 * 5 4 3 25 25 H 1.09005 * 109.46671 * 305.48711 * 6 5 4 26 26 H 1.09002 * 109.47574 * 65.48923 * 6 5 4 27 27 H 1.08995 * 109.47004 * 299.99827 * 7 6 5 28 28 H 1.09002 * 109.46996 * 59.99649 * 7 6 5 29 29 H 0.97003 * 119.99747 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.47172 * 300.00256 * 16 4 3 31 31 H 1.09003 * 109.47180 * 59.99969 * 16 4 3 32 32 H 1.08998 * 109.46865 * 299.99743 * 17 16 4 33 33 H 1.09002 * 109.46979 * 180.02562 * 17 16 4 34 34 H 1.08998 * 109.46879 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.46885 * 59.99800 * 18 17 16 36 36 H 1.08999 * 109.46640 * 300.00324 * 19 18 17 37 37 H 1.08990 * 109.46915 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47128 * 299.99824 * 20 4 3 39 39 H 1.08998 * 109.46885 * 60.00000 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4388 0.1160 5 7 2.5587 2.0757 1.2977 6 6 2.9660 1.3862 2.5293 7 6 2.2204 1.9891 3.7216 8 6 2.6377 1.2814 4.9850 9 1 3.3619 0.4814 4.9418 10 6 2.0941 1.6546 6.1959 11 7 1.2111 2.6278 6.2483 12 14 2.6120 0.7778 7.7620 13 1 3.7823 1.4734 8.3548 14 1 1.4865 0.7890 8.7308 15 1 2.9786 -0.6259 7.4454 16 6 2.7623 2.2218 -1.1384 17 6 3.2722 3.6596 -1.0226 18 6 4.7958 3.6509 -0.8834 19 6 5.1888 2.8679 0.3710 20 6 4.6789 1.4305 0.2556 21 1 -1.0502 -0.0004 -0.0002 22 1 3.0096 -0.4397 -0.9285 23 1 3.0096 -0.5828 0.8458 24 1 1.5534 2.1129 1.2196 25 1 2.7255 0.3261 2.4487 26 1 4.0397 1.5053 2.6744 27 1 2.4608 3.0491 3.8022 28 1 1.1466 1.8700 3.5766 29 1 0.8284 2.8900 7.1002 30 1 3.2049 1.7492 -2.0152 31 1 1.6768 2.2276 -1.2379 32 1 2.8298 4.1324 -0.1457 33 1 2.9918 4.2176 -1.9161 34 1 5.1590 4.6753 -0.8013 35 1 5.2380 3.1781 -1.7602 36 1 4.7464 3.3408 1.2479 37 1 6.2741 2.8621 0.4705 38 1 4.9589 0.8728 1.1493 39 1 5.1215 0.9580 -0.6212 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933265799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:43 Heat of formation + Delta-G solvation = 6.412324 kcal Electronic energy + Delta-G solvation = -17107.233630 eV Core-core repulsion = 14628.172394 eV Total energy + Delta-G solvation = -2479.061236 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73000 -36.42789 -35.34702 -34.05050 -32.06795 -31.57543 -29.74753 -27.65968 -26.00793 -23.73201 -22.49530 -21.81877 -19.88046 -18.85069 -18.37012 -16.72895 -16.54772 -16.12874 -15.86206 -15.54358 -14.97073 -14.57958 -14.39165 -14.21224 -14.03851 -13.38746 -13.19506 -12.92970 -12.86915 -12.74930 -12.52574 -12.36330 -12.01002 -11.82435 -11.45520 -11.39421 -11.34279 -11.14956 -11.05849 -10.84958 -10.67026 -10.55952 -9.11648 -8.20782 -6.32219 1.38522 1.40360 1.51144 1.87771 1.94010 2.39544 3.12475 3.38584 3.50683 3.88380 3.94423 4.06940 4.37059 4.45507 4.48237 4.54864 4.61808 4.69534 4.76934 4.78086 4.84133 4.90589 5.02286 5.08751 5.12121 5.19041 5.21354 5.42145 5.46192 5.48361 5.50470 5.54422 5.70443 5.74544 5.83861 6.17747 6.38994 6.58298 6.73528 6.85428 7.37034 8.91389 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.025620 B = 0.006506 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.641878 B = 4302.470972 C = 4803.245567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C -0.045 4.045 4 C 0.121 3.879 5 N -0.672 5.672 6 C 0.087 3.913 7 C 0.035 3.965 8 C -0.543 4.543 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.966 3.034 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.263 1.263 16 C -0.096 4.096 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.104 4.104 21 H 0.238 0.762 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.329 0.671 25 H 0.014 0.986 26 H 0.062 0.938 27 H -0.009 1.009 28 H -0.018 1.018 29 H 0.263 0.737 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -2.778 -16.557 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.206 4.206 3 C -0.083 4.083 4 C 0.030 3.970 5 N -0.302 5.302 6 C -0.042 4.042 7 C -0.002 4.002 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.790 3.210 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.188 1.188 16 C -0.134 4.134 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.150 4.150 20 C -0.141 4.141 21 H 0.255 0.745 22 H 0.128 0.872 23 H 0.095 0.905 24 H 0.147 0.853 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.010 0.990 28 H 0.001 0.999 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.632 -2.191 -16.398 17.476 hybrid contribution -0.989 -1.024 1.248 1.893 sum 4.642 -3.215 -15.149 16.168 Atomic orbital electron populations 1.25597 0.96890 1.00091 1.00860 1.23444 0.95279 1.01082 1.00766 1.19624 0.84867 0.99974 1.03871 1.21049 0.95185 0.89660 0.91145 1.60720 1.13903 1.54357 1.01259 1.21758 0.99210 0.94276 0.88942 1.18888 0.93706 0.95040 0.92608 1.21607 1.24675 1.18620 0.93214 0.92271 1.25972 0.94910 0.95867 1.02957 1.70117 1.30136 1.30232 1.26708 0.85444 0.77982 0.79154 0.78447 1.19619 1.20692 1.18768 1.21508 1.00114 0.95971 0.95776 1.21397 0.96171 0.96133 1.01191 1.21438 0.95546 0.99868 0.97649 1.21374 0.99633 0.95320 0.98669 1.21581 0.92681 0.97767 1.02094 0.74521 0.87207 0.90536 0.85282 0.96743 0.91998 0.99011 0.99918 0.92798 0.89851 0.93173 0.93188 0.91541 0.92257 0.90846 0.93557 0.91840 0.92979 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.04 19.25 74.32 1.43 -4.61 16 2 C -0.21 -6.11 11.02 31.13 0.34 -5.76 16 3 C -0.05 -1.20 4.31 28.79 0.12 -1.07 16 4 C 0.12 3.30 0.32 3.53 0.00 3.30 16 5 N -0.67 -24.17 4.49 -470.15 -2.11 -26.28 16 6 C 0.09 3.73 4.80 86.30 0.41 4.14 16 7 C 0.04 1.93 5.18 29.85 0.15 2.08 16 8 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 9 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 10 C 0.00 0.05 5.46 84.65 0.46 0.51 16 11 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 12 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 16 C -0.10 -2.25 4.69 30.60 0.14 -2.11 16 17 C -0.11 -2.64 5.77 30.59 0.18 -2.46 16 18 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 19 C -0.11 -2.89 5.77 30.58 0.18 -2.72 16 20 C -0.10 -2.59 4.27 30.58 0.13 -2.46 16 21 H 0.24 4.92 7.80 -4.41 -0.03 4.88 16 22 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.08 2.23 6.63 -2.39 -0.02 2.21 16 24 H 0.33 12.63 7.49 -89.70 -0.67 11.95 16 25 H 0.01 0.63 6.23 -2.38 -0.01 0.61 16 26 H 0.06 2.64 6.58 -2.39 -0.02 2.62 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 29 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.27 7.40 -2.39 -0.02 1.25 16 32 H 0.05 1.47 7.60 -2.39 -0.02 1.46 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.52 7.60 -2.39 -0.02 1.50 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.45 6.49 -2.38 -0.02 1.44 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -65.98 307.66 4.50 -61.48 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.33 Total: 20.31 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 3.97 Total: -44.82 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -1.83 Total: -84.08 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.98 4.50 -61.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933265799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.895 kcal (2) G-P(sol) polarization free energy of solvation -65.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds