Wall clock time and date at job start Sun Mar 29 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28021 * 124.21726 * 2 1 4 4 C 1.34434 * 117.86210 * 179.97438 * 3 2 1 5 5 N 1.34510 * 129.50108 * 179.97438 * 4 3 2 6 6 C 1.31237 * 120.48422 * 180.02562 * 5 4 3 7 7 C 1.39714 * 120.50658 * 0.02562 * 6 5 4 8 8 N 1.38789 * 120.09012 * 180.02562 * 7 6 5 9 9 C 1.36861 * 120.00106 * 359.97438 * 8 7 6 10 10 H 1.08004 * 119.99837 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00237 * 179.97438 * 9 8 7 12 12 N 1.31566 * 120.00087 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47112 * 90.00198 * 13 11 9 15 15 H 1.48504 * 109.47097 * 210.00228 * 13 11 9 16 16 H 1.48497 * 109.47351 * 330.00313 * 13 11 9 17 17 N 1.32500 * 119.82081 * 0.02562 * 7 6 5 18 18 C 1.32913 * 120.02907 * 359.97438 * 17 7 6 19 19 S 1.70647 * 124.21407 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47174 * 90.02255 * 1 2 3 21 21 H 1.08999 * 109.47074 * 210.02480 * 1 2 3 22 22 H 1.09001 * 109.46843 * 330.02634 * 1 2 3 23 23 H 1.07997 * 119.75273 * 180.02562 * 6 5 4 24 24 H 0.97001 * 120.00346 * 179.97438 * 8 7 6 25 25 H 0.96999 * 120.00271 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2269 1.0586 0.0000 4 6 3.5630 0.9098 0.0005 5 7 4.5283 1.8466 0.0002 6 6 5.7937 1.4987 0.0003 7 6 6.1585 0.1501 0.0003 8 7 7.4993 -0.2081 0.0010 9 6 8.4664 0.7604 0.0012 10 1 8.1860 1.8034 0.0004 11 6 9.8074 0.4022 0.0024 12 7 10.1490 -0.8684 0.0039 13 14 11.1272 1.7241 0.0019 14 1 11.4761 2.0758 1.4019 15 1 12.3355 1.2170 -0.6969 16 1 10.6194 2.9304 -0.6996 17 7 5.2208 -0.7861 -0.0004 18 6 3.9371 -0.4418 -0.0005 19 16 2.4666 -1.4112 0.0006 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 6.5590 2.2607 0.0005 24 1 7.7512 -1.1449 0.0013 25 1 11.0861 -1.1187 0.0044 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182242.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:34 Heat of formation + Delta-G solvation = 60.549465 kcal Electronic energy + Delta-G solvation = -13562.820710 eV Core-core repulsion = 11088.227464 eV Total energy + Delta-G solvation = -2474.593246 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 236.043 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.96524 -39.29885 -37.25090 -34.92054 -33.94527 -31.87752 -28.83701 -27.15454 -25.72834 -24.25810 -22.40047 -20.35431 -19.28772 -19.04175 -17.84660 -17.05558 -16.65371 -16.23273 -15.88052 -14.96551 -14.96041 -14.47867 -13.65443 -13.63886 -13.40424 -13.08690 -12.90052 -12.58914 -12.47323 -12.39307 -12.11420 -11.96353 -10.83166 -10.82018 -9.68614 -9.59329 -9.03677 -8.83250 -6.01414 -0.49596 0.11142 0.11540 0.84569 1.29587 1.43581 1.56639 1.59448 2.09214 2.62553 2.66053 2.74796 3.08853 3.59338 3.88584 3.94845 4.22062 4.59873 4.79550 4.82224 5.05394 5.16422 5.30726 5.53655 6.11664 6.38543 6.62144 6.89292 7.02862 7.29587 8.31549 Molecular weight = 236.04amu Principal moments of inertia in cm(-1) A = 0.067656 B = 0.005688 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.761367 B = 4921.045809 C = 5319.663018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.054 3.946 3 N -0.456 5.456 4 C 0.051 3.949 5 N -0.392 5.392 6 C 0.043 3.957 7 C 0.287 3.713 8 N -0.484 5.484 9 C -0.322 4.322 10 H 0.132 0.868 11 C -0.006 4.006 12 N -0.890 5.890 13 Si 1.014 2.986 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.249 1.249 17 N -0.546 5.546 18 C 0.040 3.960 19 S 0.143 5.857 20 H 0.104 0.896 21 H 0.109 0.891 22 H 0.093 0.907 23 H 0.191 0.809 24 H 0.402 0.598 25 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.876 0.293 -0.037 8.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.235 4.235 3 N -0.171 5.171 4 C -0.191 4.191 5 N -0.105 5.105 6 C -0.145 4.145 7 C 0.032 3.968 8 N -0.085 5.085 9 C -0.453 4.453 10 H 0.150 0.850 11 C -0.212 4.212 12 N -0.524 5.524 13 Si 0.834 3.166 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.173 1.173 17 N -0.278 5.278 18 C -0.220 4.220 19 S 0.387 5.613 20 H 0.122 0.878 21 H 0.128 0.872 22 H 0.112 0.888 23 H 0.208 0.792 24 H 0.237 0.763 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.964 -0.198 -0.041 8.966 hybrid contribution 1.824 0.464 0.006 1.882 sum -7.140 0.266 -0.035 7.145 Atomic orbital electron populations 1.20664 0.81074 1.05587 1.05447 1.27281 1.03035 0.89372 1.03816 1.65455 1.02826 1.32834 1.15985 1.19828 0.90549 0.88671 1.20058 1.67466 0.99829 1.35828 1.07422 1.23186 0.92183 0.94733 1.04404 1.19211 0.86042 0.90808 1.00708 1.41087 1.00228 1.10445 1.56781 1.20534 0.85645 0.90748 1.48344 0.85041 1.26580 1.00512 0.99893 0.94233 1.69775 1.21293 1.18064 1.43224 0.84590 0.75711 0.77001 0.79280 1.19050 1.20076 1.17254 1.67088 0.98180 1.35428 1.27135 1.25539 0.98036 0.96381 1.02039 1.83219 0.92568 1.08731 1.76757 0.87786 0.87242 0.88843 0.79230 0.76287 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.44 71.24 0.74 -0.50 15 2 C 0.05 1.71 7.29 88.67 0.65 2.35 15 3 N -0.46 -18.75 10.56 -187.25 -1.98 -20.73 15 4 C 0.05 2.39 8.13 134.18 1.09 3.48 15 5 N -0.39 -18.62 10.53 -193.51 -2.04 -20.65 15 6 C 0.04 1.96 10.47 85.14 0.89 2.85 15 7 C 0.29 13.68 7.64 133.25 1.02 14.70 15 8 N -0.48 -23.09 5.44 -188.89 -1.03 -24.11 15 9 C -0.32 -14.60 9.55 84.05 0.80 -13.80 15 10 H 0.13 5.39 5.66 -2.91 -0.02 5.37 15 11 C -0.01 -0.26 5.50 84.87 0.47 0.20 15 12 N -0.89 -42.56 13.05 21.65 0.28 -42.28 15 13 Si 1.01 34.34 29.55 68.60 2.03 36.37 15 14 H -0.27 -8.83 7.11 99.48 0.71 -8.12 15 15 H -0.28 -9.29 7.11 99.48 0.71 -8.58 15 16 H -0.25 -7.94 7.11 99.48 0.71 -7.23 15 17 N -0.55 -26.47 10.54 -188.07 -1.98 -28.45 15 18 C 0.04 1.79 7.71 85.02 0.66 2.45 15 19 S 0.14 4.71 23.11 -56.49 -1.31 3.41 15 20 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.11 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.19 7.47 5.94 -2.91 -0.02 7.45 15 24 H 0.40 20.03 8.01 -92.71 -0.74 19.28 15 25 H 0.29 12.91 8.31 -92.71 -0.77 12.14 15 Total: -1.00 -60.74 243.17 0.81 -59.93 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.52 Total: 24.78 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.31 Total: 11.74 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -6.74 Total: -136.23 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.31 Total: 3.41 kcal Total: -60.74 0.81 -59.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182242.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.477 kcal (2) G-P(sol) polarization free energy of solvation -60.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds