Wall clock time and date at job start Sun Mar 29 2020 22:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86794 * 119.99893 * 2 1 4 4 H 1.48496 * 109.47334 * 239.99680 * 3 2 1 5 5 H 1.48506 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47119 * 119.99804 * 3 2 1 7 7 C 1.38800 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99615 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00008 * 174.93654 * 9 7 2 11 11 H 1.09004 * 109.39427 * 52.81934 * 10 9 7 12 12 C 1.53069 * 109.43848 * 292.93406 * 10 9 7 13 13 C 1.53412 * 108.31076 * 191.74221 * 12 10 9 14 14 O 1.42824 * 108.37638 * 64.67061 * 13 12 10 15 15 C 1.35844 * 117.84826 * 310.70958 * 14 13 12 16 16 C 1.39149 * 118.50361 * 197.53226 * 15 14 13 17 17 C 1.37970 * 120.20942 * 180.70926 * 16 15 14 18 18 C 1.38288 * 119.95845 * 359.45149 * 17 16 15 19 19 C 1.38105 * 119.98835 * 0.18882 * 18 17 16 20 20 C 1.38375 * 121.79693 * 17.50546 * 15 14 13 21 21 H 0.97003 * 119.99740 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.69573 * 72.03771 * 12 10 9 23 23 H 1.09008 * 109.70508 * 311.44429 * 12 10 9 24 24 H 1.08997 * 109.67985 * 304.94843 * 13 12 10 25 25 H 1.09001 * 109.68073 * 184.39257 * 13 12 10 26 26 H 1.07995 * 119.89483 * 0.42684 * 16 15 14 27 27 H 1.07997 * 120.01997 * 179.73687 * 17 16 15 28 28 H 1.08000 * 120.01109 * 180.20198 * 18 17 16 29 29 H 1.07994 * 119.84974 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5099 -3.8879 -0.1595 11 1 3.2473 -3.6803 0.6160 12 6 3.1585 -3.7237 -1.5362 13 6 4.1188 -4.8990 -1.7597 14 8 3.3526 -6.1033 -1.8096 15 6 2.4481 -6.3213 -0.8198 16 6 1.9670 -7.6135 -0.6328 17 6 1.0364 -7.8720 0.3525 18 6 0.5881 -6.8467 1.1650 19 6 1.0689 -5.5644 0.9871 20 6 2.0005 -5.2982 -0.0027 21 1 -0.4850 0.8401 -0.0004 22 1 3.7118 -2.7853 -1.5720 23 1 2.3887 -3.7265 -2.3079 24 1 4.8324 -4.9515 -0.9374 25 1 4.6518 -4.7636 -2.7009 26 1 2.3196 -8.4158 -1.2639 27 1 0.6619 -8.8753 0.4922 28 1 -0.1379 -7.0487 1.9387 29 1 0.7169 -4.7653 1.6226 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165818598.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:48 Heat of formation + Delta-G solvation = -26.425750 kcal Electronic energy + Delta-G solvation = -14178.561294 eV Core-core repulsion = 11771.444112 eV Total energy + Delta-G solvation = -2407.117182 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.20763 -37.12436 -33.78999 -32.50963 -30.26054 -29.83535 -25.86581 -25.03410 -23.25559 -22.10486 -19.61517 -17.92770 -17.19580 -16.20791 -15.72686 -14.87068 -14.74114 -14.49383 -13.83036 -13.53493 -13.30706 -12.88282 -12.66879 -12.22632 -11.65574 -11.16804 -11.09867 -11.08620 -10.92599 -10.67589 -10.47698 -10.28748 -9.66058 -9.11954 -8.47967 -8.25595 -7.78719 -6.60429 -6.29126 -4.00721 1.65156 1.77878 3.16086 3.18787 3.23840 3.40935 3.64017 4.10226 4.20906 4.96635 5.06806 5.16592 5.17128 5.31612 5.40339 5.49457 5.56440 5.67227 5.73823 5.90377 5.97644 6.10435 6.38673 6.41028 6.62764 6.65822 6.86016 6.96904 7.13951 7.53952 7.76919 8.29457 9.17154 10.78541 Molecular weight = 236.06amu Principal moments of inertia in cm(-1) A = 0.038390 B = 0.007450 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.183739 B = 3757.671255 C = 4337.007608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.073 0.927 9 S -0.098 6.098 10 C -0.050 4.050 11 H 0.081 0.919 12 C -0.143 4.143 13 C 0.061 3.939 14 O -0.321 6.321 15 C 0.131 3.869 16 C -0.158 4.158 17 C -0.096 4.096 18 C -0.157 4.157 19 C -0.070 4.070 20 C -0.124 4.124 21 H 0.269 0.731 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -10.950 -0.498 12.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.671 4.671 8 H 0.091 0.909 9 S 0.135 5.865 10 C -0.179 4.179 11 H 0.099 0.901 12 C -0.182 4.182 13 C -0.015 4.015 14 O -0.235 6.235 15 C 0.085 3.915 16 C -0.177 4.177 17 C -0.115 4.115 18 C -0.176 4.176 19 C -0.089 4.089 20 C -0.126 4.126 21 H 0.079 0.921 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.663 -11.078 -0.560 11.681 hybrid contribution 1.840 1.602 0.005 2.440 sum 5.503 -9.476 -0.555 10.972 Atomic orbital electron populations 1.70004 1.05937 1.27584 1.46861 1.25002 0.95040 0.99043 0.94457 0.86244 0.79283 0.81277 0.78867 1.19915 1.20804 1.19910 1.22714 0.94612 0.90943 1.58836 0.90897 1.84836 1.08133 0.98321 1.95250 1.21995 1.02470 0.94597 0.98791 0.90115 1.22563 0.99567 0.98369 0.97735 1.23054 0.92759 0.83232 1.02499 1.85911 1.50091 1.42062 1.45441 1.18708 0.90926 0.92998 0.88864 1.20459 1.01837 0.94030 1.01390 1.20824 0.96602 0.98977 0.95073 1.21007 1.02257 0.93046 1.01256 1.21224 0.94196 0.96937 0.96545 1.19589 1.00636 0.93667 0.98671 0.92142 0.89558 0.89805 0.92358 0.87966 0.85831 0.86008 0.86164 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.22 55.49 0.73 -24.64 15 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 15 3 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.52 -14.36 9.01 30.94 0.28 -14.08 15 8 H 0.07 1.92 7.53 -52.49 -0.40 1.53 15 9 S -0.10 -2.50 19.37 -107.50 -2.08 -4.58 15 10 C -0.05 -1.04 2.61 -27.82 -0.07 -1.11 15 11 H 0.08 1.67 8.14 -51.91 -0.42 1.25 15 12 C -0.14 -2.64 5.22 -26.48 -0.14 -2.77 15 13 C 0.06 0.93 7.03 37.37 0.26 1.19 15 14 O -0.32 -5.45 10.27 -19.25 -0.20 -5.65 15 15 C 0.13 2.32 6.47 -39.19 -0.25 2.06 15 16 C -0.16 -2.41 9.94 -39.34 -0.39 -2.80 15 17 C -0.10 -1.33 10.04 -39.66 -0.40 -1.73 15 18 C -0.16 -2.36 10.04 -39.61 -0.40 -2.76 15 19 C -0.07 -1.25 9.02 -39.53 -0.36 -1.61 15 20 C -0.12 -2.35 5.44 -104.44 -0.57 -2.92 15 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.09 1.60 7.65 -51.93 -0.40 1.20 15 23 H 0.08 1.67 8.11 -51.92 -0.42 1.25 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.10 1.26 8.14 -51.93 -0.42 0.83 15 26 H 0.12 1.61 8.06 -52.49 -0.42 1.18 15 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.12 1.50 8.06 -52.49 -0.42 1.07 15 29 H 0.14 2.58 7.15 -52.49 -0.38 2.20 15 LS Contribution 261.40 15.07 3.94 3.94 Total: -1.00 -30.18 261.40 -8.02 -38.20 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -3.26 Total: 1.32 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.13 Total: -24.58 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.73 Total: -24.64 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.20 Total: -5.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.08 Total: -4.58 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.18 -8.02 -38.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165818598.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.779 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds