Wall clock time and date at job start Sun Mar 29 2020 22:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86807 * 119.99599 * 2 1 4 4 H 1.48502 * 109.46811 * 239.99524 * 3 2 1 5 5 H 1.48493 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47166 * 119.99995 * 3 2 1 7 7 C 1.39867 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00391 * 197.64030 * 7 2 1 9 9 C 1.41210 * 119.99701 * 17.65094 * 7 2 1 10 10 C 1.41325 * 120.56862 * 23.64078 * 9 7 2 11 11 C 1.36565 * 118.40764 * 179.97438 * 10 9 7 12 12 C 1.39710 * 119.49191 * 0.02562 * 11 10 9 13 13 N 1.38367 * 119.43034 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99996 * 359.97438 * 13 12 11 15 15 C 1.53037 * 113.15336 * 255.37672 * 14 13 12 16 16 S 1.81428 * 89.88907 * 211.85319 * 15 14 13 17 17 C 1.53040 * 113.15159 * 154.99685 * 14 13 12 18 18 N 1.32745 * 121.13875 * 359.97438 * 12 11 10 19 19 C 1.31485 * 121.73249 * 0.04923 * 18 12 11 20 20 H 0.97000 * 120.00453 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.79799 * 359.96585 * 10 9 7 22 22 H 1.07997 * 120.24993 * 179.72470 * 11 10 9 23 23 H 0.96994 * 120.00158 * 179.97438 * 13 12 11 24 24 H 1.09000 * 112.49293 * 25.21743 * 14 13 12 25 25 H 1.09001 * 113.14794 * 327.10865 * 15 14 13 26 26 H 1.08994 * 113.15104 * 96.59271 * 15 14 13 27 27 H 1.08997 * 113.15342 * 263.41365 * 17 14 13 28 28 H 1.09003 * 113.14777 * 32.85237 * 17 14 13 29 29 H 1.07998 * 119.82068 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6966 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0503 -1.2331 0.2840 9 6 1.3522 -2.4055 -0.3697 10 6 0.2037 -2.3693 -1.1925 11 6 -0.3956 -3.5508 -1.5239 12 6 0.1371 -4.7503 -1.0452 13 7 -0.4715 -5.9466 -1.3814 14 6 -1.6643 -5.9480 -2.2320 15 6 -2.9565 -6.2126 -1.4558 16 16 -3.6567 -7.0402 -2.9107 17 6 -1.8578 -7.2606 -2.9947 18 7 1.2171 -4.7621 -0.2734 19 6 1.8306 -3.6525 0.0746 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1907 -1.4297 -1.5504 22 1 -1.2775 -3.5574 -2.1473 23 1 -0.1084 -6.7843 -1.0539 24 1 -1.7208 -5.0679 -2.8724 25 1 -2.8172 -6.8826 -0.6074 26 1 -3.4878 -5.3004 -1.1846 27 1 -1.4690 -7.2262 -4.0124 28 1 -1.5061 -8.1326 -2.4432 29 1 2.7068 -3.6980 0.7043 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168361242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:50 Heat of formation + Delta-G solvation = 55.555529 kcal Electronic energy + Delta-G solvation = -13943.570452 eV Core-core repulsion = 11572.300996 eV Total energy + Delta-G solvation = -2371.269456 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.81839 -36.98849 -34.10235 -32.01290 -30.63436 -28.77772 -26.25423 -24.88123 -22.54741 -21.46699 -20.25215 -17.33024 -17.04175 -16.41887 -15.62324 -15.07662 -14.70669 -13.91684 -13.63827 -13.50505 -12.96507 -12.86691 -12.37572 -11.93070 -11.80514 -11.55988 -11.19522 -11.10629 -10.95234 -10.62325 -10.39883 -9.83489 -9.51129 -8.88328 -8.31105 -8.08663 -7.84371 -6.94140 -6.69803 -4.25628 1.76430 1.91764 2.69940 2.94269 3.05716 3.08456 3.24078 3.91224 4.00757 4.45418 4.69355 4.87023 4.95531 5.31057 5.42711 5.66540 5.71040 5.81372 6.10550 6.40039 6.54408 6.80121 7.11714 7.25915 7.33502 7.65540 7.85286 8.14972 8.33720 8.56428 8.78287 8.83551 9.63651 10.17061 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.050730 B = 0.005309 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.813695 B = 5272.474297 C = 5662.932756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.034 3.966 10 C -0.096 4.096 11 C -0.200 4.200 12 C 0.268 3.732 13 N -0.725 5.725 14 C 0.174 3.826 15 C -0.101 4.101 16 S -0.300 6.300 17 C -0.092 4.092 18 N -0.517 5.517 19 C 0.008 3.992 20 H 0.281 0.719 21 H 0.128 0.872 22 H 0.099 0.901 23 H 0.392 0.608 24 H 0.123 0.877 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -6.485 -3.921 8.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.029 3.971 10 C -0.122 4.122 11 C -0.224 4.224 12 C 0.036 3.964 13 N -0.363 5.363 14 C 0.063 3.937 15 C -0.252 4.252 16 S -0.076 6.076 17 C -0.242 4.242 18 N -0.232 5.232 19 C -0.150 4.150 20 H 0.092 0.908 21 H 0.146 0.854 22 H 0.117 0.883 23 H 0.227 0.773 24 H 0.140 0.860 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.589 -7.290 -4.371 9.660 hybrid contribution 0.916 1.472 0.481 1.800 sum -3.673 -5.817 -3.890 7.904 Atomic orbital electron populations 1.69800 1.07527 1.29303 1.36234 1.25869 0.94730 1.01273 0.92378 0.86354 0.80093 0.80245 0.79957 1.18896 1.20434 1.19019 1.19329 0.97997 0.90960 1.40403 0.90323 1.18379 0.93197 0.93575 0.91962 1.21323 0.97213 0.96614 0.97062 1.20843 1.02510 0.92792 1.06206 1.17708 0.93558 0.85083 1.00087 1.43608 1.29810 1.05966 1.56936 1.22068 0.83874 0.97153 0.90612 1.25356 0.98020 1.03198 0.98583 1.88849 1.11090 1.74735 1.32922 1.24877 0.92017 1.02021 1.05246 1.66498 1.08728 1.33170 1.14773 1.22182 1.01745 0.87216 1.03875 0.90845 0.85390 0.88334 0.77350 0.85971 0.87801 0.88438 0.88291 0.87745 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.16 10.92 55.54 0.61 -19.55 15 2 C 0.07 1.81 5.17 -17.34 -0.09 1.72 15 3 Si 0.91 18.23 29.59 -169.99 -5.03 13.20 15 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 7 C -0.46 -11.70 9.07 -37.84 -0.34 -12.04 15 8 H 0.08 1.92 7.90 -52.49 -0.41 1.51 15 9 C 0.03 0.88 5.59 -106.65 -0.60 0.28 15 10 C -0.10 -2.38 8.75 -39.01 -0.34 -2.72 15 11 C -0.20 -4.43 9.19 -39.64 -0.36 -4.80 15 12 C 0.27 5.76 7.64 -155.12 -1.19 4.58 15 13 N -0.73 -12.07 5.47 -64.07 -0.35 -12.42 15 14 C 0.17 2.39 3.64 -67.89 -0.25 2.14 15 15 C -0.10 -1.31 7.75 37.18 0.29 -1.02 15 16 S -0.30 -3.90 24.79 -107.50 -2.67 -6.56 15 17 C -0.09 -1.04 7.69 37.18 0.29 -0.76 15 18 N -0.52 -12.18 10.37 -11.79 -0.12 -12.30 15 19 C 0.01 0.20 10.97 -16.75 -0.18 0.02 15 20 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 21 H 0.13 3.27 6.19 -52.49 -0.32 2.94 15 22 H 0.10 1.92 6.01 -52.49 -0.32 1.60 15 23 H 0.39 6.02 8.84 -40.82 -0.36 5.65 15 24 H 0.12 1.76 6.10 -51.93 -0.32 1.45 15 25 H 0.10 1.29 8.14 -51.93 -0.42 0.86 15 26 H 0.10 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.10 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 29 H 0.13 2.90 8.06 -52.49 -0.42 2.48 15 LS Contribution 261.90 15.07 3.95 3.95 Total: -1.00 -27.00 261.90 -9.37 -36.37 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -2.98 Total: 9.91 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.78 Total: -12.60 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.13 Total: -44.27 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -2.67 Total: -6.56 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.00 -9.37 -36.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168361242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.930 kcal (2) G-P(sol) polarization free energy of solvation -27.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds