Wall clock time and date at job start Sun Mar 29 2020 22:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86807 * 119.99599 * 2 1 4 4 H 1.48502 * 109.46811 * 239.99524 * 3 2 1 5 5 H 1.48493 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47166 * 119.99995 * 3 2 1 7 7 C 1.39867 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00391 * 197.64030 * 7 2 1 9 9 C 1.41210 * 119.99701 * 17.65094 * 7 2 1 10 10 C 1.41325 * 120.56862 * 23.64078 * 9 7 2 11 11 C 1.36565 * 118.40764 * 179.97438 * 10 9 7 12 12 C 1.39710 * 119.49191 * 0.02562 * 11 10 9 13 13 N 1.38367 * 119.43034 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99996 * 359.97438 * 13 12 11 15 15 C 1.53037 * 113.15336 * 255.37672 * 14 13 12 16 16 S 1.81428 * 89.88907 * 211.85319 * 15 14 13 17 17 C 1.53040 * 113.15159 * 154.99685 * 14 13 12 18 18 N 1.32745 * 121.13875 * 359.97438 * 12 11 10 19 19 C 1.31485 * 121.73249 * 0.04923 * 18 12 11 20 20 H 0.97000 * 120.00453 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.79799 * 359.96585 * 10 9 7 22 22 H 1.07997 * 120.24993 * 179.72470 * 11 10 9 23 23 H 0.96994 * 120.00158 * 179.97438 * 13 12 11 24 24 H 1.09000 * 112.49293 * 25.21743 * 14 13 12 25 25 H 1.09001 * 113.14794 * 327.10865 * 15 14 13 26 26 H 1.08994 * 113.15104 * 96.59271 * 15 14 13 27 27 H 1.08997 * 113.15342 * 263.41365 * 17 14 13 28 28 H 1.09003 * 113.14777 * 32.85237 * 17 14 13 29 29 H 1.07998 * 119.82068 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6966 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0503 -1.2331 0.2840 9 6 1.3522 -2.4055 -0.3697 10 6 0.2037 -2.3693 -1.1925 11 6 -0.3956 -3.5508 -1.5239 12 6 0.1371 -4.7503 -1.0452 13 7 -0.4715 -5.9466 -1.3814 14 6 -1.6643 -5.9480 -2.2320 15 6 -2.9565 -6.2126 -1.4558 16 16 -3.6567 -7.0402 -2.9107 17 6 -1.8578 -7.2606 -2.9947 18 7 1.2171 -4.7621 -0.2734 19 6 1.8306 -3.6525 0.0746 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1907 -1.4297 -1.5504 22 1 -1.2775 -3.5574 -2.1473 23 1 -0.1084 -6.7843 -1.0539 24 1 -1.7208 -5.0679 -2.8724 25 1 -2.8172 -6.8826 -0.6074 26 1 -3.4878 -5.3004 -1.1846 27 1 -1.4690 -7.2262 -4.0124 28 1 -1.5061 -8.1326 -2.4432 29 1 2.7068 -3.6980 0.7043 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168361242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:49 Heat of formation + Delta-G solvation = 40.302559 kcal Electronic energy + Delta-G solvation = -13944.231871 eV Core-core repulsion = 11572.300996 eV Total energy + Delta-G solvation = -2371.930875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.50174 -38.34124 -35.86276 -33.54251 -32.46678 -30.50738 -27.25714 -26.65559 -24.17532 -23.16993 -21.71325 -19.18835 -18.50830 -17.69368 -16.96777 -16.76748 -16.09029 -15.54785 -15.14139 -14.93832 -14.49824 -13.91253 -13.84964 -13.66068 -13.46982 -13.17695 -12.77148 -12.71731 -12.26577 -11.99669 -11.65740 -11.44755 -11.21190 -10.53563 -10.16339 -9.92436 -8.86807 -8.70309 -8.44683 -6.13706 0.75321 0.87283 0.91471 1.13753 1.42785 1.52954 1.59378 2.25006 2.61675 2.80723 3.43663 3.79992 3.83078 3.89161 4.24064 4.36696 4.50963 4.59544 4.68188 4.78720 4.85489 4.98382 5.28102 5.41430 5.57415 5.86845 5.98705 6.45696 6.58933 6.82543 6.92354 7.10771 7.83210 8.38469 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.050730 B = 0.005309 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.813695 B = 5272.474297 C = 5662.932756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.491 4.491 8 H 0.078 0.922 9 C 0.002 3.998 10 C -0.110 4.110 11 C -0.204 4.204 12 C 0.282 3.718 13 N -0.714 5.714 14 C 0.166 3.834 15 C -0.096 4.096 16 S -0.315 6.315 17 C -0.074 4.074 18 N -0.531 5.531 19 C -0.005 4.005 20 H 0.287 0.713 21 H 0.116 0.884 22 H 0.125 0.875 23 H 0.402 0.598 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 -7.221 -4.522 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.522 4.522 8 H 0.096 0.904 9 C -0.003 4.003 10 C -0.137 4.137 11 C -0.227 4.227 12 C 0.047 3.953 13 N -0.352 5.352 14 C 0.056 3.944 15 C -0.246 4.246 16 S -0.091 6.091 17 C -0.223 4.223 18 N -0.247 5.247 19 C -0.162 4.162 20 H 0.097 0.903 21 H 0.134 0.866 22 H 0.143 0.857 23 H 0.238 0.762 24 H 0.135 0.865 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.142 0.858 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.929 -8.072 -4.982 10.690 hybrid contribution 0.904 1.519 0.613 1.871 sum -4.025 -6.553 -4.369 8.845 Atomic orbital electron populations 1.69850 1.08831 1.30457 1.36954 1.26663 0.95471 1.04285 0.91461 0.85270 0.78726 0.75874 0.79953 1.18621 1.19524 1.18524 1.19568 0.98298 0.92047 1.42302 0.90366 1.18660 0.94198 0.94316 0.93105 1.21347 0.97565 0.97187 0.97595 1.21081 1.03147 0.92227 1.06275 1.18029 0.92495 0.86660 0.98080 1.43644 1.30107 1.04667 1.56757 1.22270 0.82888 0.98567 0.90642 1.25256 0.97265 1.03288 0.98821 1.89014 1.12483 1.74753 1.32807 1.24800 0.90506 1.01028 1.05992 1.66588 1.09668 1.32648 1.15771 1.22337 1.02291 0.87329 1.04226 0.90262 0.86641 0.85689 0.76235 0.86505 0.86878 0.88958 0.86842 0.85776 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.59 10.92 21.82 0.24 -42.35 15 2 C 0.03 1.72 5.17 85.23 0.44 2.16 15 3 Si 0.98 37.51 29.59 68.60 2.03 39.54 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 15 5 H -0.27 -9.86 7.11 99.48 0.71 -9.16 15 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 7 C -0.49 -25.85 9.07 23.39 0.21 -25.64 15 8 H 0.08 3.94 7.90 -2.91 -0.02 3.92 15 9 C 0.00 0.12 5.59 -21.18 -0.12 0.00 15 10 C -0.11 -5.57 8.75 22.64 0.20 -5.37 15 11 C -0.20 -8.90 9.19 22.23 0.20 -8.70 15 12 C 0.28 11.78 7.64 133.32 1.02 12.80 15 13 N -0.71 -21.99 5.47 -356.63 -1.95 -23.94 15 14 C 0.17 4.11 3.64 45.02 0.16 4.28 15 15 C -0.10 -2.25 7.75 71.99 0.56 -1.70 15 16 S -0.32 -7.38 24.79 -56.49 -1.40 -8.78 15 17 C -0.07 -1.43 7.69 72.00 0.55 -0.88 15 18 N -0.53 -24.73 10.37 -191.20 -1.98 -26.71 15 19 C 0.00 -0.24 10.97 85.36 0.94 0.70 15 20 H 0.29 13.33 8.30 -92.71 -0.77 12.56 15 21 H 0.12 6.06 6.19 -2.91 -0.02 6.04 15 22 H 0.13 4.68 6.01 -2.91 -0.02 4.67 15 23 H 0.40 11.15 8.84 -92.71 -0.82 10.33 15 24 H 0.12 3.08 6.10 -2.39 -0.01 3.07 15 25 H 0.11 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 27 H 0.11 1.93 8.14 -2.39 -0.02 1.91 15 28 H 0.12 1.98 8.14 -2.39 -0.02 1.96 15 29 H 0.13 6.26 8.06 -2.91 -0.02 6.23 15 Total: -1.00 -57.87 261.90 1.46 -56.41 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.36 Total: 28.18 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 4.17 Total: -22.35 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -3.69 Total: -93.00 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Atomic # 16 Polarization: -7.38 SS G_CDS: -1.40 Total: -8.78 kcal Total: -57.87 1.46 -56.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168361242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.713 kcal (2) G-P(sol) polarization free energy of solvation -57.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds