Wall clock time and date at job start Sun Mar 29 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31485 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48503 * 109.47050 * 240.00063 * 3 2 1 5 5 H 1.48496 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47029 * 120.00354 * 3 2 1 7 7 C 1.38867 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.37071 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.34786 * 120.00174 * 179.97438 * 9 7 2 11 11 S 1.71196 * 119.99592 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99988 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99546 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47012 * 180.02562 * 13 12 10 15 15 C 1.38238 * 119.99792 * 90.00154 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.98090 * 14 13 12 20 20 H 0.97004 * 119.99604 * 0.02562 * 1 2 3 21 21 H 0.96998 * 120.00245 * 0.02562 * 9 7 2 22 22 H 0.96998 * 120.00430 * 0.02562 * 12 10 9 23 23 H 1.09005 * 109.47643 * 60.00506 * 13 12 10 24 24 H 1.09000 * 109.47513 * 299.99670 * 13 12 10 25 25 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 29 29 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.1026 1.6964 -1.2125 5 1 1.2839 2.7464 -0.0006 6 1 3.1027 1.6963 1.2125 7 6 2.0091 -1.2026 -0.0005 8 1 3.0891 -1.2027 -0.0010 9 7 1.3237 -2.3897 -0.0016 10 6 1.9976 -3.5570 -0.0026 11 16 3.7095 -3.5570 -0.0033 12 7 1.3236 -4.7241 -0.0032 13 6 2.0561 -5.9928 -0.0037 14 6 1.0768 -7.1383 -0.0049 15 6 0.6281 -7.6628 -1.2026 16 6 -0.2698 -8.7139 -1.2036 17 6 -0.7186 -9.2408 -0.0070 18 6 -0.2740 -8.7127 1.1906 19 6 0.6274 -7.6647 1.1917 20 1 -0.4850 0.8401 -0.0004 21 1 0.3538 -2.3897 -0.0024 22 1 0.3537 -4.7241 -0.0032 23 1 2.6828 -6.0511 0.8863 24 1 2.6828 -6.0503 -0.8938 25 1 0.9791 -7.2515 -2.1375 26 1 -0.6206 -9.1234 -2.1394 27 1 -1.4198 -10.0622 -0.0079 28 1 -0.6280 -9.1215 2.1255 29 1 0.9785 -7.2554 2.1274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195639250.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:57 Heat of formation + Delta-G solvation = 28.237022 kcal Electronic energy + Delta-G solvation = -13537.576323 eV Core-core repulsion = 11165.122248 eV Total energy + Delta-G solvation = -2372.454075 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38304 -37.59989 -35.00853 -32.42581 -30.93352 -30.83648 -26.38366 -24.58713 -22.59080 -22.24761 -21.27893 -18.69443 -17.59457 -16.53477 -15.44760 -15.26948 -15.10023 -14.66808 -13.86923 -13.70404 -13.64437 -13.36847 -12.83278 -12.49455 -11.97863 -11.84026 -11.15679 -11.00961 -10.96058 -10.77160 -10.51577 -9.83613 -9.47458 -8.96562 -8.88818 -8.33631 -6.92072 -6.64824 -6.06161 -4.21646 1.23593 1.35933 2.66791 3.10285 3.14728 3.24632 3.43616 3.72399 3.91208 4.30655 4.80778 4.85077 4.87880 4.95580 5.08604 5.15528 5.45729 5.47158 5.84268 5.88906 6.08988 6.27269 6.39836 6.44378 6.68187 6.94874 7.14921 7.28935 7.35000 8.12760 8.42331 8.91961 9.08339 10.22140 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.043382 B = 0.005172 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.271467 B = 5412.504631 C = 5753.288258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.032 3.968 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.289 4.289 8 H 0.144 0.856 9 N -0.472 5.472 10 C 0.462 3.538 11 S -0.763 6.763 12 N -0.716 5.716 13 C 0.186 3.814 14 C -0.100 4.100 15 C -0.101 4.101 16 C -0.125 4.125 17 C -0.120 4.120 18 C -0.125 4.125 19 C -0.101 4.101 20 H 0.283 0.717 21 H 0.392 0.608 22 H 0.382 0.618 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 -12.564 -0.009 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.423 4.423 8 H 0.161 0.839 9 N -0.075 5.075 10 C 0.099 3.901 11 S -0.639 6.639 12 N -0.354 5.354 13 C 0.062 3.938 14 C -0.101 4.101 15 C -0.119 4.119 16 C -0.143 4.143 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.119 4.119 20 H 0.093 0.907 21 H 0.228 0.772 22 H 0.217 0.783 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.142 0.858 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.829 -12.311 -0.008 13.224 hybrid contribution -1.707 0.723 -0.001 1.854 sum -6.536 -11.588 -0.009 13.304 Atomic orbital electron populations 1.69669 1.06562 1.29977 1.45070 1.25702 0.95767 1.01132 0.94995 0.85584 0.78746 0.78100 0.80157 1.18885 1.20674 1.18877 1.20732 0.95720 0.80076 1.45802 0.83886 1.41046 1.08893 1.03912 1.53695 1.20913 0.93870 0.80690 0.94626 1.92431 0.93662 1.95252 1.82542 1.44099 1.07564 1.03382 1.80365 1.20092 0.91371 0.78129 1.04217 1.20190 0.98614 0.97950 0.93344 1.21189 0.96746 0.96090 0.97917 1.21150 0.98049 0.97042 0.98074 1.21158 1.00007 0.99959 0.92701 1.21151 0.98031 0.97069 0.98064 1.21187 0.96711 0.96113 0.97928 0.90702 0.77182 0.78332 0.90211 0.90218 0.85756 0.86124 0.86299 0.86123 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.99 13.05 55.49 0.72 -21.26 15 2 C 0.03 0.79 5.50 -17.47 -0.10 0.70 15 3 Si 0.95 19.84 29.55 -169.99 -5.02 14.82 15 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 7 C -0.29 -7.61 9.51 -14.98 -0.14 -7.75 15 8 H 0.14 4.03 6.22 -52.49 -0.33 3.71 15 9 N -0.47 -11.49 5.29 -12.53 -0.07 -11.55 15 10 C 0.46 10.87 7.94 -86.91 -0.69 10.18 15 11 S -0.76 -20.71 27.15 -107.50 -2.92 -23.63 15 12 N -0.72 -13.30 5.55 -63.21 -0.35 -13.65 15 13 C 0.19 3.09 5.25 -5.19 -0.03 3.06 15 14 C -0.10 -1.35 5.25 -104.62 -0.55 -1.90 15 15 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 15 16 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 15 17 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 15 18 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 15 19 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 15 20 H 0.28 6.66 8.31 -40.82 -0.34 6.32 15 21 H 0.39 9.03 7.91 -40.82 -0.32 8.71 15 22 H 0.38 6.28 8.48 -40.82 -0.35 5.93 15 23 H 0.08 1.42 7.94 -51.93 -0.41 1.01 15 24 H 0.08 1.42 7.93 -51.93 -0.41 1.01 15 25 H 0.12 1.46 8.06 -52.48 -0.42 1.03 15 26 H 0.12 1.02 8.06 -52.49 -0.42 0.59 15 27 H 0.12 0.91 8.06 -52.49 -0.42 0.49 15 28 H 0.12 1.02 8.06 -52.49 -0.42 0.59 15 29 H 0.12 1.46 8.06 -52.49 -0.42 1.03 15 LS Contribution 272.00 15.07 4.10 4.10 Total: -1.00 -30.21 272.00 -10.07 -40.29 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -3.07 Total: 14.89 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.47 Total: -4.01 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.31 Total: -46.46 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: -20.71 SS G_CDS: -2.92 Total: -23.63 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.21 -10.07 -40.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195639250.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.522 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds