Wall clock time and date at job start Sun Mar 29 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31485 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48503 * 109.47050 * 240.00063 * 3 2 1 5 5 H 1.48496 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47029 * 120.00354 * 3 2 1 7 7 C 1.38867 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.37071 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.34786 * 120.00174 * 179.97438 * 9 7 2 11 11 S 1.71196 * 119.99592 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99988 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99546 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47012 * 180.02562 * 13 12 10 15 15 C 1.38238 * 119.99792 * 90.00154 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.98090 * 14 13 12 20 20 H 0.97004 * 119.99604 * 0.02562 * 1 2 3 21 21 H 0.96998 * 120.00245 * 0.02562 * 9 7 2 22 22 H 0.96998 * 120.00430 * 0.02562 * 12 10 9 23 23 H 1.09005 * 109.47643 * 60.00506 * 13 12 10 24 24 H 1.09000 * 109.47513 * 299.99670 * 13 12 10 25 25 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 29 29 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.1026 1.6964 -1.2125 5 1 1.2839 2.7464 -0.0006 6 1 3.1027 1.6963 1.2125 7 6 2.0091 -1.2026 -0.0005 8 1 3.0891 -1.2027 -0.0010 9 7 1.3237 -2.3897 -0.0016 10 6 1.9976 -3.5570 -0.0026 11 16 3.7095 -3.5570 -0.0033 12 7 1.3236 -4.7241 -0.0032 13 6 2.0561 -5.9928 -0.0037 14 6 1.0768 -7.1383 -0.0049 15 6 0.6281 -7.6628 -1.2026 16 6 -0.2698 -8.7139 -1.2036 17 6 -0.7186 -9.2408 -0.0070 18 6 -0.2740 -8.7127 1.1906 19 6 0.6274 -7.6647 1.1917 20 1 -0.4850 0.8401 -0.0004 21 1 0.3538 -2.3897 -0.0024 22 1 0.3537 -4.7241 -0.0032 23 1 2.6828 -6.0511 0.8863 24 1 2.6828 -6.0503 -0.8938 25 1 0.9791 -7.2515 -2.1375 26 1 -0.6206 -9.1234 -2.1394 27 1 -1.4198 -10.0622 -0.0079 28 1 -0.6280 -9.1215 2.1255 29 1 0.9785 -7.2554 2.1274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195639250.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:57 Heat of formation + Delta-G solvation = 10.575395 kcal Electronic energy + Delta-G solvation = -13538.342189 eV Core-core repulsion = 11165.122248 eV Total energy + Delta-G solvation = -2373.219941 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 236.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43465 -39.31713 -36.64862 -34.14643 -32.14906 -31.80302 -27.94993 -26.20920 -24.13622 -23.46840 -22.32034 -20.60175 -19.21453 -17.57603 -17.28630 -16.52362 -16.37321 -16.05073 -15.55813 -15.37342 -15.12176 -14.28727 -13.89033 -13.63091 -13.61384 -13.44984 -12.78613 -12.75457 -12.13909 -11.99665 -11.93272 -11.88879 -11.25821 -10.11176 -9.83654 -9.81885 -8.82493 -8.75922 -8.23114 -6.22186 0.29375 0.48637 0.79043 1.39905 1.49227 1.55803 1.57765 2.12929 2.44006 2.92002 2.96031 3.32905 3.71365 3.95437 4.15584 4.29437 4.42379 4.60956 4.76282 4.79746 5.06835 5.15849 5.24936 5.38358 5.54756 5.59994 5.65255 5.68747 6.08533 6.42527 6.48683 6.95811 7.17249 8.31871 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.043382 B = 0.005172 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.271467 B = 5412.504631 C = 5753.288258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.006 3.994 3 Si 1.007 2.993 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.323 4.323 8 H 0.120 0.880 9 N -0.473 5.473 10 C 0.476 3.524 11 S -0.827 6.827 12 N -0.693 5.693 13 C 0.193 3.807 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.125 4.125 17 C -0.114 4.114 18 C -0.125 4.125 19 C -0.111 4.111 20 H 0.291 0.709 21 H 0.399 0.601 22 H 0.398 0.602 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.123 0.877 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -13.499 -0.009 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.201 4.201 3 Si 0.828 3.172 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.457 4.457 8 H 0.138 0.862 9 N -0.077 5.077 10 C 0.110 3.890 11 S -0.704 6.704 12 N -0.331 5.331 13 C 0.070 3.930 14 C -0.117 4.117 15 C -0.130 4.130 16 C -0.143 4.143 17 C -0.132 4.132 18 C -0.143 4.143 19 C -0.130 4.130 20 H 0.101 0.899 21 H 0.236 0.764 22 H 0.235 0.765 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.141 0.859 26 H 0.163 0.837 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.766 -13.286 -0.008 14.909 hybrid contribution -1.215 0.865 -0.001 1.492 sum -7.981 -12.421 -0.010 14.764 Atomic orbital electron populations 1.69689 1.07259 1.31191 1.44539 1.26427 0.96564 1.03295 0.93789 0.84756 0.77821 0.74840 0.79734 1.19095 1.18768 1.19079 1.20609 0.95077 0.81412 1.48596 0.86249 1.40954 1.09058 1.03687 1.54001 1.20637 0.92593 0.81944 0.93807 1.92522 0.97398 1.95805 1.84675 1.44128 1.08335 1.02624 1.78043 1.20027 0.92040 0.78319 1.02642 1.19886 0.99435 0.97665 0.94683 1.21278 0.97440 0.96947 0.97330 1.21459 0.97083 0.96126 0.99643 1.21579 0.99508 1.00035 0.92029 1.21460 0.97065 0.96155 0.99631 1.21277 0.97406 0.96966 0.97343 0.89881 0.76386 0.76513 0.91741 0.91749 0.85876 0.83668 0.83188 0.83667 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.84 13.05 21.65 0.28 -43.56 15 2 C 0.01 0.27 5.50 84.90 0.47 0.74 15 3 Si 1.01 40.12 29.55 68.60 2.03 42.15 15 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 15 5 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 7 C -0.32 -17.27 9.51 84.02 0.80 -16.47 15 8 H 0.12 6.94 6.22 -2.91 -0.02 6.92 15 9 N -0.47 -23.23 5.29 -193.56 -1.02 -24.25 15 10 C 0.48 22.77 7.94 179.05 1.42 24.19 15 11 S -0.83 -46.28 27.15 -56.49 -1.53 -47.82 15 12 N -0.69 -25.85 5.55 -353.90 -1.97 -27.82 15 13 C 0.19 6.54 5.25 85.64 0.45 6.99 15 14 C -0.12 -3.06 5.25 -19.86 -0.10 -3.16 15 15 C -0.11 -2.59 9.70 22.27 0.22 -2.37 15 16 C -0.13 -2.28 10.05 22.27 0.22 -2.06 15 17 C -0.11 -1.85 10.05 22.27 0.22 -1.63 15 18 C -0.13 -2.28 10.05 22.27 0.22 -2.06 15 19 C -0.11 -2.58 9.70 22.27 0.22 -2.37 15 20 H 0.29 13.25 8.31 -92.70 -0.77 12.48 15 21 H 0.40 18.35 7.91 -92.71 -0.73 17.62 15 22 H 0.40 12.78 8.48 -92.71 -0.79 11.99 15 23 H 0.06 2.38 7.94 -2.38 -0.02 2.37 15 24 H 0.06 2.38 7.93 -2.39 -0.02 2.36 15 25 H 0.12 2.81 8.06 -2.91 -0.02 2.79 15 26 H 0.15 1.91 8.06 -2.91 -0.02 1.88 15 27 H 0.15 1.54 8.06 -2.91 -0.02 1.52 15 28 H 0.15 1.91 8.06 -2.91 -0.02 1.88 15 29 H 0.12 2.81 8.06 -2.91 -0.02 2.78 15 Total: -1.00 -65.32 272.00 1.58 -63.74 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.34 Total: 35.76 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 4.14 Total: 1.79 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -2.71 Total: -95.63 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: -46.28 SS G_CDS: -1.53 Total: -47.82 kcal Total: -65.32 1.58 -63.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195639250.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.312 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds