Wall clock time and date at job start Sun Mar 29 2020 22:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48493 * 109.47105 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.46918 * 30.00184 * 3 2 1 6 6 H 1.48503 * 109.47208 * 149.99711 * 3 2 1 7 7 C 1.37876 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00092 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46715 * 299.99494 * 9 7 2 11 11 O 1.45205 * 109.46877 * 179.97438 * 9 7 2 12 12 C 1.34770 * 116.99724 * 149.99991 * 11 9 7 13 13 O 1.21545 * 119.99976 * 359.97438 * 12 11 9 14 14 C 1.47230 * 120.00108 * 179.97438 * 12 11 9 15 15 C 1.47054 * 127.20072 * 179.97438 * 14 12 11 16 16 C 1.34163 * 105.94627 * 179.73774 * 15 14 12 17 17 O 1.34218 * 109.14425 * 0.23906 * 16 15 14 18 18 C 1.33620 * 110.92664 * 0.02562 * 17 16 15 19 19 C 1.52994 * 109.47122 * 59.99549 * 9 7 2 20 20 C 1.52999 * 117.50203 * 248.74793 * 19 9 7 21 21 C 1.53001 * 117.50091 * 180.08866 * 19 9 7 22 22 H 0.97001 * 119.99897 * 0.02562 * 1 2 3 23 23 H 1.08002 * 127.02970 * 0.02562 * 15 14 12 24 24 H 1.07999 * 125.42404 * 180.26666 * 16 15 14 25 25 H 1.07997 * 125.80891 * 179.97438 * 18 17 16 26 26 H 1.09008 * 115.55184 * 34.41974 * 19 9 7 27 27 H 1.09005 * 117.49336 * 359.97438 * 20 19 9 28 28 H 1.09001 * 117.50318 * 145.01928 * 20 19 9 29 29 H 1.08996 * 117.50146 * 214.98062 * 21 19 9 30 30 H 1.09001 * 117.49421 * 359.97375 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0005 12 6 1.8017 -4.7436 0.6010 13 8 0.7007 -4.8140 1.1110 14 6 2.7061 -5.9047 0.6390 15 6 2.4428 -7.2173 1.2476 16 6 3.5448 -7.9514 1.0317 17 8 4.4421 -7.2118 0.3614 18 6 3.9659 -5.9869 0.1198 19 6 0.3717 -2.5804 -1.2489 20 6 -1.1440 -2.5128 -1.0519 21 6 -0.4799 -3.8382 -1.4330 22 1 -0.4850 0.8401 -0.0004 23 1 1.5440 -7.5285 1.7592 24 1 3.6870 -8.9747 1.3466 25 1 4.4871 -5.1979 -0.4018 26 1 0.7840 -2.1162 -2.1449 27 1 -1.5148 -2.4108 -0.0319 28 1 -1.7291 -2.0044 -1.8183 29 1 -0.6282 -4.2012 -2.4500 30 1 -0.4134 -4.6079 -0.6641 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345548201.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:14 Heat of formation + Delta-G solvation = -45.968470 kcal Electronic energy + Delta-G solvation = -16457.172457 eV Core-core repulsion = 13606.454968 eV Total energy + Delta-G solvation = -2850.717489 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.41945 -39.33368 -36.31949 -34.82106 -32.74678 -32.61260 -29.89034 -27.80811 -24.18321 -22.81833 -21.33624 -21.22271 -20.17732 -19.17067 -18.02708 -16.59454 -16.32740 -16.07649 -15.32368 -15.00033 -14.60054 -14.10504 -13.85121 -12.86501 -12.78962 -12.57251 -12.32436 -11.53522 -11.35055 -11.03007 -10.95170 -10.42907 -10.27872 -9.82512 -9.76424 -9.70173 -9.36191 -9.01826 -8.72571 -8.64234 -8.42060 -6.14922 -4.23064 1.51445 2.13651 2.98669 3.25294 3.31134 3.34086 3.64912 3.69018 4.34892 4.77209 4.91228 5.08482 5.18061 5.38096 5.71841 5.88809 5.97780 6.08504 6.19280 6.33274 6.42916 6.59298 6.71133 7.01730 7.02898 7.18311 7.28034 7.40983 7.62850 7.86003 8.11512 8.65199 8.89739 9.41500 10.91901 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.031281 B = 0.007131 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.901039 B = 3925.797818 C = 4531.938265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.250 3.750 10 H 0.049 0.951 11 O -0.350 6.350 12 C 0.525 3.475 13 O -0.515 6.515 14 C -0.218 4.218 15 C -0.164 4.164 16 C -0.051 4.051 17 O -0.179 6.179 18 C 0.045 3.955 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.229 4.229 22 H 0.264 0.736 23 H 0.159 0.841 24 H 0.207 0.793 25 H 0.222 0.778 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -11.278 -0.390 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.198 3.802 10 H 0.067 0.933 11 O -0.267 6.267 12 C 0.370 3.630 13 O -0.407 6.407 14 C -0.221 4.221 15 C -0.183 4.183 16 C -0.116 4.116 17 O -0.074 6.074 18 C -0.025 4.025 19 C -0.134 4.134 20 C -0.161 4.161 21 C -0.266 4.266 22 H 0.074 0.926 23 H 0.176 0.824 24 H 0.224 0.776 25 H 0.238 0.762 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.214 -11.220 -0.331 12.376 hybrid contribution -0.080 1.050 0.002 1.053 sum 5.134 -10.170 -0.329 11.397 Atomic orbital electron populations 1.70047 1.05765 1.27014 1.48010 1.24880 0.95032 0.99071 0.94556 0.86353 0.79686 0.82306 0.78231 1.20448 1.21035 1.19686 1.20899 0.93803 0.88338 1.53569 0.91286 1.20230 0.86113 0.80187 0.93671 0.93327 1.86532 1.49226 1.21780 1.69128 1.19915 0.84653 0.82921 0.75529 1.90753 1.21973 1.83608 1.44353 1.20932 0.96187 0.95228 1.09751 1.22778 1.00308 0.91764 1.03443 1.23844 0.88809 0.97954 1.01020 1.83788 1.42475 1.22292 1.58878 1.24789 0.93869 0.85432 0.98419 1.22599 0.92938 0.97462 1.00441 1.22369 0.95516 0.96749 1.01422 1.23285 1.09431 0.93033 1.00881 0.92605 0.82363 0.77629 0.76152 0.89314 0.89320 0.90763 0.91045 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.22 11.43 55.43 0.63 -23.58 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -14.60 8.88 -34.44 -0.31 -14.91 16 8 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 9 C 0.25 6.63 2.25 -27.88 -0.06 6.57 16 10 H 0.05 1.44 6.92 -51.93 -0.36 1.08 16 11 O -0.35 -8.31 9.70 -40.68 -0.39 -8.71 16 12 C 0.53 11.45 7.17 34.38 0.25 11.69 16 13 O -0.52 -12.46 14.08 -19.30 -0.27 -12.73 16 14 C -0.22 -3.74 6.31 -103.30 -0.65 -4.39 16 15 C -0.16 -2.29 11.01 -37.44 -0.41 -2.70 16 16 C -0.05 -0.55 12.03 29.30 0.35 -0.20 16 17 O -0.18 -2.21 10.52 7.72 0.08 -2.12 16 18 C 0.04 0.62 11.94 30.11 0.36 0.98 16 19 C -0.12 -2.86 4.47 -90.62 -0.41 -3.27 16 20 C -0.12 -2.89 9.04 -26.70 -0.24 -3.13 16 21 C -0.23 -5.07 9.81 -26.69 -0.26 -5.33 16 22 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 23 H 0.16 2.05 8.06 -52.49 -0.42 1.62 16 24 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 25 H 0.22 2.52 8.06 -52.49 -0.42 2.10 16 26 H 0.09 2.24 8.11 -51.92 -0.42 1.82 16 27 H 0.09 2.22 8.05 -51.93 -0.42 1.80 16 28 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.09 2.17 5.37 -51.93 -0.28 1.89 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -30.99 269.82 -5.52 -36.51 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.14 Total: 3.67 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -1.48 Total: -12.93 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.63 Total: -23.58 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.58 Total: -23.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.99 -5.52 -36.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548201.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.458 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds