Wall clock time and date at job start Sun Mar 29 2020 22:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48493 * 109.47105 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.46918 * 30.00184 * 3 2 1 6 6 H 1.48503 * 109.47208 * 149.99711 * 3 2 1 7 7 C 1.37876 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00092 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46715 * 299.99494 * 9 7 2 11 11 O 1.45205 * 109.46877 * 179.97438 * 9 7 2 12 12 C 1.34770 * 116.99724 * 149.99991 * 11 9 7 13 13 O 1.21545 * 119.99976 * 359.97438 * 12 11 9 14 14 C 1.47230 * 120.00108 * 179.97438 * 12 11 9 15 15 C 1.47054 * 127.20072 * 179.97438 * 14 12 11 16 16 C 1.34163 * 105.94627 * 179.73774 * 15 14 12 17 17 O 1.34218 * 109.14425 * 0.23906 * 16 15 14 18 18 C 1.33620 * 110.92664 * 0.02562 * 17 16 15 19 19 C 1.52994 * 109.47122 * 59.99549 * 9 7 2 20 20 C 1.52999 * 117.50203 * 248.74793 * 19 9 7 21 21 C 1.53001 * 117.50091 * 180.08866 * 19 9 7 22 22 H 0.97001 * 119.99897 * 0.02562 * 1 2 3 23 23 H 1.08002 * 127.02970 * 0.02562 * 15 14 12 24 24 H 1.07999 * 125.42404 * 180.26666 * 16 15 14 25 25 H 1.07997 * 125.80891 * 179.97438 * 18 17 16 26 26 H 1.09008 * 115.55184 * 34.41974 * 19 9 7 27 27 H 1.09005 * 117.49336 * 359.97438 * 20 19 9 28 28 H 1.09001 * 117.50318 * 145.01928 * 20 19 9 29 29 H 1.08996 * 117.50146 * 214.98062 * 21 19 9 30 30 H 1.09001 * 117.49421 * 359.97375 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0005 12 6 1.8017 -4.7436 0.6010 13 8 0.7007 -4.8140 1.1110 14 6 2.7061 -5.9047 0.6390 15 6 2.4428 -7.2173 1.2476 16 6 3.5448 -7.9514 1.0317 17 8 4.4421 -7.2118 0.3614 18 6 3.9659 -5.9869 0.1198 19 6 0.3717 -2.5804 -1.2489 20 6 -1.1440 -2.5128 -1.0519 21 6 -0.4799 -3.8382 -1.4330 22 1 -0.4850 0.8401 -0.0004 23 1 1.5440 -7.5285 1.7592 24 1 3.6870 -8.9747 1.3466 25 1 4.4871 -5.1979 -0.4018 26 1 0.7840 -2.1162 -2.1449 27 1 -1.5148 -2.4108 -0.0319 28 1 -1.7291 -2.0044 -1.8183 29 1 -0.6282 -4.2012 -2.4500 30 1 -0.4134 -4.6079 -0.6641 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548201.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:14 Heat of formation + Delta-G solvation = -64.344975 kcal Electronic energy + Delta-G solvation = -16457.969322 eV Core-core repulsion = 13606.454968 eV Total energy + Delta-G solvation = -2851.514354 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.48681 -41.13249 -38.19528 -36.68222 -34.71959 -33.87459 -31.04358 -29.76460 -25.89534 -24.60499 -23.09452 -22.35866 -21.76359 -20.98167 -19.43113 -18.46315 -18.06625 -17.31659 -16.82014 -16.75596 -16.30995 -15.71875 -15.30613 -14.62660 -14.39331 -13.88691 -13.64356 -13.33735 -13.25988 -12.94369 -12.79669 -12.30280 -12.18004 -11.79087 -11.57684 -11.29249 -10.96597 -10.89904 -10.62554 -10.44738 -9.77086 -8.21785 -6.39288 0.23439 1.09667 1.43175 1.44792 1.55114 1.83507 2.14457 2.15863 2.44665 3.05657 3.22036 3.68852 3.83618 4.07416 4.19377 4.29178 4.42828 4.48678 4.70472 4.78313 4.81816 5.02980 5.09751 5.23355 5.32462 5.37478 5.46987 5.54596 5.82566 5.97186 6.11055 6.64197 6.98708 7.30502 8.84832 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.031281 B = 0.007131 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.901039 B = 3925.797818 C = 4531.938265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.067 0.933 9 C 0.255 3.745 10 H 0.005 0.995 11 O -0.356 6.356 12 C 0.520 3.480 13 O -0.551 6.551 14 C -0.265 4.265 15 C -0.194 4.194 16 C -0.014 4.014 17 O -0.170 6.170 18 C 0.070 3.930 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.202 4.202 22 H 0.267 0.733 23 H 0.160 0.840 24 H 0.260 0.740 25 H 0.242 0.758 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -12.322 -1.159 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.085 0.915 9 C 0.202 3.798 10 H 0.023 0.977 11 O -0.272 6.272 12 C 0.368 3.632 13 O -0.445 6.445 14 C -0.268 4.268 15 C -0.213 4.213 16 C -0.079 4.079 17 O -0.064 6.064 18 C 0.000 4.000 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.239 4.239 22 H 0.076 0.924 23 H 0.177 0.823 24 H 0.276 0.724 25 H 0.258 0.742 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.875 -12.293 -1.103 14.128 hybrid contribution -0.559 1.257 0.289 1.406 sum 6.315 -11.036 -0.813 12.741 Atomic orbital electron populations 1.70167 1.07106 1.28017 1.47890 1.25746 0.95957 1.02382 0.93671 0.85278 0.78375 0.77644 0.78650 1.19371 1.20526 1.19181 1.21180 0.93909 0.89469 1.54797 0.91492 1.19883 0.86184 0.81071 0.92635 0.97735 1.86510 1.48670 1.22186 1.69848 1.20697 0.85086 0.83159 0.74248 1.90718 1.23769 1.84077 1.45923 1.20895 0.97293 0.94927 1.13646 1.22934 1.02103 0.91052 1.05189 1.24729 0.86611 0.98895 0.97645 1.83861 1.42438 1.21616 1.58490 1.25071 0.92406 0.86190 0.96351 1.22431 0.93325 0.99812 0.99451 1.22294 0.94854 0.98130 1.00642 1.23257 1.06699 0.91734 1.02181 0.92351 0.82265 0.72397 0.74195 0.89861 0.91769 0.89008 0.87774 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.67 11.43 21.45 0.25 -50.43 16 2 C 0.02 1.34 5.30 84.66 0.45 1.79 16 3 Si 0.98 42.78 29.54 68.60 2.03 44.80 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.56 -31.57 8.88 25.60 0.23 -31.34 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.26 14.11 2.25 29.85 0.07 14.18 16 10 H 0.00 0.31 6.92 -2.39 -0.02 0.29 16 11 O -0.36 -17.49 9.70 -56.81 -0.55 -18.04 16 12 C 0.52 23.53 7.17 70.19 0.50 24.03 16 13 O -0.55 -28.09 14.08 19.69 0.28 -27.82 16 14 C -0.27 -9.01 6.31 -19.01 -0.12 -9.13 16 15 C -0.19 -5.15 11.01 23.65 0.26 -4.89 16 16 C -0.01 -0.25 12.03 66.89 0.80 0.56 16 17 O -0.17 -3.57 10.52 4.72 0.05 -3.52 16 18 C 0.07 1.81 11.94 67.41 0.80 2.61 16 19 C -0.13 -6.65 4.47 -10.80 -0.05 -6.70 16 20 C -0.12 -5.82 9.04 30.62 0.28 -5.55 16 21 C -0.20 -8.94 9.81 30.62 0.30 -8.64 16 22 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 23 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 24 H 0.26 1.68 8.06 -2.91 -0.02 1.65 16 25 H 0.24 5.01 8.06 -2.91 -0.02 4.98 16 26 H 0.08 4.27 8.11 -2.38 -0.02 4.25 16 27 H 0.06 3.36 8.05 -2.38 -0.02 3.34 16 28 H 0.09 4.00 8.14 -2.39 -0.02 3.98 16 29 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.08 3.86 5.37 -2.39 -0.01 3.85 16 Total: -1.00 -69.90 269.82 6.72 -63.18 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.15 Total: 14.90 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 3.53 Total: -23.08 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.25 Total: -50.43 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.22 Total: -49.38 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -69.90 6.72 -63.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548201.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.169 kcal (2) G-P(sol) polarization free energy of solvation -69.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds