Wall clock time and date at job start Sun Mar 29 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86800 * 119.99785 * 2 1 4 4 H 1.48499 * 109.47274 * 274.97739 * 3 2 1 5 5 H 1.48491 * 109.47591 * 34.98415 * 3 2 1 6 6 H 1.48505 * 109.46746 * 154.98600 * 3 2 1 7 7 C 1.40047 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00210 * 186.15629 * 7 2 1 9 9 C 1.46376 * 119.99660 * 6.14550 * 7 2 1 10 10 O 1.21684 * 120.00622 * 353.94731 * 9 7 2 11 11 N 1.34785 * 119.99570 * 173.94343 * 9 7 2 12 12 N 1.40098 * 119.99492 * 180.02562 * 11 9 7 13 13 C 1.34785 * 119.99492 * 179.97438 * 12 11 9 14 14 O 1.21514 * 119.99719 * 359.97438 * 13 12 11 15 15 C 1.48157 * 119.99647 * 179.97438 * 13 12 11 16 16 C 1.39715 * 120.17681 * 180.27964 * 15 13 12 17 17 C 1.38832 * 117.89500 * 180.21645 * 16 15 13 18 18 C 1.38576 * 118.06542 * 359.51293 * 17 16 15 19 19 N 1.32170 * 120.06765 * 0.25141 * 18 17 16 20 20 N 1.28345 * 122.30222 * 359.97438 * 19 18 17 21 21 H 0.97004 * 120.00051 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99967 * 359.97438 * 11 9 7 23 23 H 0.97000 * 120.00541 * 359.97438 * 12 11 9 24 24 H 1.07995 * 121.05759 * 359.97438 * 16 15 13 25 25 H 1.07995 * 120.96394 * 179.78768 * 17 16 15 26 26 H 1.08004 * 119.96116 * 180.27668 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5869 1.4120 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0998 9 6 1.2813 -2.4768 -0.1368 10 8 0.0645 -2.4827 -0.1389 11 7 1.9611 -3.6341 -0.2601 12 7 1.2665 -4.8437 -0.3911 13 6 1.9463 -6.0010 -0.5150 14 8 3.1614 -5.9950 -0.5135 15 6 1.2118 -7.2803 -0.6529 16 6 1.9126 -8.4827 -0.7756 17 6 1.1770 -9.6528 -0.9068 18 6 -0.2055 -9.5582 -0.8976 19 7 -0.7877 -8.3783 -0.7717 20 7 -0.1159 -7.2911 -0.6544 21 1 -0.4850 0.8401 -0.0004 22 1 2.9310 -3.6293 -0.2590 23 1 0.2965 -4.8484 -0.3927 24 1 2.9924 -8.5011 -0.7726 25 1 1.6679 -10.6093 -1.0084 26 1 -0.8078 -10.4496 -0.9930 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633306120.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:39 Heat of formation + Delta-G solvation = 19.678042 kcal Electronic energy + Delta-G solvation = -15471.384338 eV Core-core repulsion = 12552.265903 eV Total energy + Delta-G solvation = -2919.118435 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.23262 -39.16732 -37.18322 -34.32406 -33.32689 -32.91313 -32.54608 -30.06263 -26.46481 -25.19447 -24.66049 -21.35974 -20.54944 -18.70301 -17.53308 -17.08464 -16.61672 -16.20225 -15.51192 -15.41073 -14.67298 -14.27477 -14.00618 -13.79361 -13.38149 -12.73221 -12.58081 -11.63507 -11.41499 -11.16459 -10.66376 -10.51701 -10.38463 -10.27977 -10.16220 -10.02823 -9.90038 -8.97257 -7.97311 -7.22935 -6.39155 -4.83537 0.33501 0.56488 2.67495 2.72124 3.08601 3.16441 3.20908 3.60901 3.70803 4.04073 4.22091 4.36652 4.41001 4.47068 4.74650 4.89131 5.40247 5.57843 5.62120 5.66991 5.88288 7.20760 7.28792 7.63118 7.86486 8.13208 8.40762 8.68383 8.83366 9.17080 10.35042 10.53984 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.063144 B = 0.004931 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.324270 B = 5677.461412 C = 6107.042273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.087 3.913 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.552 3.448 10 O -0.574 6.574 11 N -0.557 5.557 12 N -0.477 5.477 13 C 0.552 3.448 14 O -0.552 6.552 15 C 0.044 3.956 16 C -0.066 4.066 17 C -0.123 4.123 18 C 0.048 3.952 19 N -0.239 5.239 20 N -0.210 5.210 21 H 0.273 0.727 22 H 0.415 0.585 23 H 0.436 0.564 24 H 0.164 0.836 25 H 0.157 0.843 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -15.652 -1.744 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.358 3.642 10 O -0.454 6.454 11 N -0.312 5.312 12 N -0.218 5.218 13 C 0.333 3.667 14 O -0.430 6.430 15 C -0.104 4.104 16 C -0.095 4.095 17 C -0.152 4.152 18 C -0.115 4.115 19 N -0.082 5.082 20 N -0.057 5.057 21 H 0.084 0.916 22 H 0.254 0.746 23 H 0.279 0.721 24 H 0.181 0.819 25 H 0.175 0.825 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.639 -14.590 -1.633 14.773 hybrid contribution 1.705 -0.265 -0.126 1.730 sum 3.343 -14.855 -1.760 15.328 Atomic orbital electron populations 1.70014 1.07182 1.27936 1.33719 1.25732 0.94765 1.00496 0.92466 0.86167 0.80140 0.80553 0.78859 1.19591 1.20271 1.18616 1.20672 0.94498 0.87887 1.53766 0.90459 1.18737 0.87673 0.80643 0.77170 1.90643 1.13696 1.85181 1.55925 1.46102 1.07900 0.95006 1.82201 1.44594 1.10108 0.99227 1.67855 1.17399 0.86821 0.81801 0.80729 1.90767 1.12194 1.86078 1.53963 1.22772 0.92752 0.95369 0.99524 1.22419 1.03268 0.91089 0.92750 1.22441 0.95039 0.99976 0.97773 1.24520 0.94030 0.98626 0.94311 1.73181 1.31081 0.95321 1.08585 1.73339 1.05373 1.20588 1.06417 0.91632 0.74590 0.72077 0.81860 0.82502 0.80595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.06 11.85 55.55 0.66 -21.40 15 2 C 0.09 2.34 5.49 -17.37 -0.10 2.24 15 3 Si 0.92 19.49 29.56 -169.99 -5.03 14.47 15 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.53 -14.53 9.53 -35.63 -0.34 -14.87 15 8 H 0.08 1.92 7.85 -52.49 -0.41 1.51 15 9 C 0.55 15.52 7.86 -12.98 -0.10 15.41 15 10 O -0.57 -18.07 14.88 5.20 0.08 -17.99 15 11 N -0.56 -13.22 6.26 30.19 0.19 -13.03 15 12 N -0.48 -10.19 6.25 30.60 0.19 -10.00 15 13 C 0.55 10.35 7.93 -12.18 -0.10 10.26 15 14 O -0.55 -11.07 16.23 5.35 0.09 -10.99 15 15 C 0.04 0.67 6.83 -82.83 -0.57 0.10 15 16 C -0.07 -0.74 9.73 -38.81 -0.38 -1.11 15 17 C -0.12 -0.98 10.20 -39.24 -0.40 -1.38 15 18 C 0.05 0.44 11.31 -17.28 -0.20 0.25 15 19 N -0.24 -3.34 11.51 30.59 0.35 -2.98 15 20 N -0.21 -3.42 10.75 33.32 0.36 -3.06 15 21 H 0.27 7.13 8.29 -40.82 -0.34 6.79 15 22 H 0.41 9.08 7.98 -182.60 -1.46 7.63 15 23 H 0.44 9.51 7.36 -182.60 -1.34 8.17 15 24 H 0.16 1.59 7.72 -52.49 -0.41 1.19 15 25 H 0.16 0.58 8.06 -52.49 -0.42 0.16 15 26 H 0.18 0.88 8.06 -52.48 -0.42 0.45 15 LS Contribution 252.82 15.07 3.81 3.81 Total: -1.00 -34.86 252.82 -5.07 -39.93 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.60 Total: 10.34 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -2.17 Total: 10.90 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 1.75 Total: -50.48 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: 0.16 Total: -28.98 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -34.86 -5.07 -39.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633306120.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.610 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds