Wall clock time and date at job start Sun Mar 29 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86800 * 119.99785 * 2 1 4 4 H 1.48499 * 109.47274 * 274.97739 * 3 2 1 5 5 H 1.48491 * 109.47591 * 34.98415 * 3 2 1 6 6 H 1.48505 * 109.46746 * 154.98600 * 3 2 1 7 7 C 1.40047 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00210 * 186.15629 * 7 2 1 9 9 C 1.46376 * 119.99660 * 6.14550 * 7 2 1 10 10 O 1.21684 * 120.00622 * 353.94731 * 9 7 2 11 11 N 1.34785 * 119.99570 * 173.94343 * 9 7 2 12 12 N 1.40098 * 119.99492 * 180.02562 * 11 9 7 13 13 C 1.34785 * 119.99492 * 179.97438 * 12 11 9 14 14 O 1.21514 * 119.99719 * 359.97438 * 13 12 11 15 15 C 1.48157 * 119.99647 * 179.97438 * 13 12 11 16 16 C 1.39715 * 120.17681 * 180.27964 * 15 13 12 17 17 C 1.38832 * 117.89500 * 180.21645 * 16 15 13 18 18 C 1.38576 * 118.06542 * 359.51293 * 17 16 15 19 19 N 1.32170 * 120.06765 * 0.25141 * 18 17 16 20 20 N 1.28345 * 122.30222 * 359.97438 * 19 18 17 21 21 H 0.97004 * 120.00051 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99967 * 359.97438 * 11 9 7 23 23 H 0.97000 * 120.00541 * 359.97438 * 12 11 9 24 24 H 1.07995 * 121.05759 * 359.97438 * 16 15 13 25 25 H 1.07995 * 120.96394 * 179.78768 * 17 16 15 26 26 H 1.08004 * 119.96116 * 180.27668 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5869 1.4120 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0998 9 6 1.2813 -2.4768 -0.1368 10 8 0.0645 -2.4827 -0.1389 11 7 1.9611 -3.6341 -0.2601 12 7 1.2665 -4.8437 -0.3911 13 6 1.9463 -6.0010 -0.5150 14 8 3.1614 -5.9950 -0.5135 15 6 1.2118 -7.2803 -0.6529 16 6 1.9126 -8.4827 -0.7756 17 6 1.1770 -9.6528 -0.9068 18 6 -0.2055 -9.5582 -0.8976 19 7 -0.7877 -8.3783 -0.7717 20 7 -0.1159 -7.2911 -0.6544 21 1 -0.4850 0.8401 -0.0004 22 1 2.9310 -3.6293 -0.2590 23 1 0.2965 -4.8484 -0.3927 24 1 2.9924 -8.5011 -0.7726 25 1 1.6679 -10.6093 -1.0084 26 1 -0.8078 -10.4496 -0.9930 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633306120.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:39 Heat of formation + Delta-G solvation = -9.736770 kcal Electronic energy + Delta-G solvation = -15472.659860 eV Core-core repulsion = 12552.265903 eV Total energy + Delta-G solvation = -2920.393957 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 236.070 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.26223 -40.74147 -39.15760 -36.12703 -34.68678 -34.22224 -34.00465 -31.82936 -28.40684 -26.39644 -25.58990 -22.86801 -22.44206 -20.24084 -18.80376 -18.64001 -17.88448 -17.61054 -17.23599 -16.80252 -16.16627 -15.64049 -15.60346 -14.98597 -14.73239 -14.59151 -14.17089 -13.31367 -12.89468 -12.72634 -12.64522 -12.08428 -12.01881 -11.46982 -11.34453 -11.25880 -10.97939 -10.86364 -10.17740 -9.13223 -8.42411 -6.98129 -0.64294 -0.26828 1.06420 1.39065 1.44396 1.48092 1.61649 2.26001 2.34835 2.55324 2.55802 3.27781 3.46091 3.48250 3.70495 3.85744 3.92579 4.14040 4.73722 4.84426 5.16153 5.25158 5.38975 5.86488 5.96065 6.21774 6.73677 6.96243 7.19249 7.46659 8.26344 8.53397 Molecular weight = 236.07amu Principal moments of inertia in cm(-1) A = 0.063144 B = 0.004931 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.324270 B = 5677.461412 C = 6107.042273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.031 3.969 3 Si 1.009 2.991 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.556 4.556 8 H 0.098 0.902 9 C 0.538 3.462 10 O -0.620 6.620 11 N -0.554 5.554 12 N -0.494 5.494 13 C 0.560 3.440 14 O -0.566 6.566 15 C 0.017 3.983 16 C -0.070 4.070 17 C -0.090 4.090 18 C 0.060 3.940 19 N -0.276 5.276 20 N -0.249 5.249 21 H 0.280 0.720 22 H 0.422 0.578 23 H 0.431 0.569 24 H 0.178 0.822 25 H 0.215 0.785 26 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 -17.551 -2.045 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.186 4.186 3 Si 0.827 3.173 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.594 4.594 8 H 0.116 0.884 9 C 0.345 3.655 10 O -0.505 6.505 11 N -0.307 5.307 12 N -0.235 5.235 13 C 0.344 3.656 14 O -0.444 6.444 15 C -0.131 4.131 16 C -0.099 4.099 17 C -0.119 4.119 18 C -0.103 4.103 19 N -0.118 5.118 20 N -0.095 5.095 21 H 0.090 0.910 22 H 0.263 0.737 23 H 0.273 0.727 24 H 0.195 0.805 25 H 0.232 0.768 26 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.198 -16.547 -1.937 16.965 hybrid contribution 1.222 0.020 -0.055 1.224 sum 4.421 -16.527 -1.993 17.223 Atomic orbital electron populations 1.70160 1.09601 1.29682 1.34726 1.27045 0.95648 1.04944 0.90963 0.84837 0.78836 0.74288 0.79327 1.18636 1.19479 1.16949 1.21234 0.95672 0.88383 1.54068 0.88425 1.19068 0.87322 0.82122 0.77016 1.90593 1.15521 1.86254 1.58123 1.45577 1.08024 0.95698 1.81414 1.44762 1.09873 0.98923 1.69935 1.18009 0.86839 0.82152 0.78604 1.90735 1.12921 1.86606 1.54144 1.22402 0.93087 0.94700 1.02871 1.22698 1.04126 0.90586 0.92459 1.23060 0.94216 1.00795 0.93795 1.25369 0.95483 0.98316 0.91103 1.73091 1.31840 0.96477 1.10424 1.73245 1.05843 1.22546 1.07893 0.90951 0.73697 0.72683 0.80475 0.76810 0.75823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.58 11.85 21.83 0.26 -48.32 15 2 C 0.03 1.67 5.49 85.30 0.47 2.13 15 3 Si 1.01 39.80 29.56 68.60 2.03 41.83 15 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 5 H -0.27 -10.23 7.11 99.48 0.71 -9.53 15 6 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 7 C -0.56 -31.09 9.53 24.83 0.24 -30.85 15 8 H 0.10 4.86 7.85 -2.91 -0.02 4.84 15 9 C 0.54 31.59 7.86 86.36 0.68 32.27 15 10 O -0.62 -41.18 14.88 -4.30 -0.06 -41.24 15 11 N -0.55 -27.41 6.26 -176.62 -1.10 -28.52 15 12 N -0.49 -22.16 6.25 -175.38 -1.10 -23.25 15 13 C 0.56 21.62 7.93 86.88 0.69 22.31 15 14 O -0.57 -22.89 16.23 -3.76 -0.06 -22.95 15 15 C 0.02 0.54 6.83 41.99 0.29 0.82 15 16 C -0.07 -1.39 9.73 22.77 0.22 -1.17 15 17 C -0.09 -0.99 10.20 22.49 0.23 -0.76 15 18 C 0.06 0.87 11.31 84.72 0.96 1.82 15 19 N -0.28 -7.41 11.51 -57.15 -0.66 -8.06 15 20 N -0.25 -8.24 10.75 -48.49 -0.52 -8.76 15 21 H 0.28 15.04 8.29 -92.71 -0.77 14.27 15 22 H 0.42 19.11 7.98 -213.32 -1.70 17.40 15 23 H 0.43 20.18 7.36 -213.32 -1.57 18.61 15 24 H 0.18 2.97 7.72 -2.91 -0.02 2.95 15 25 H 0.22 -0.03 8.06 -2.91 -0.02 -0.06 15 26 H 0.23 0.94 8.06 -2.91 -0.02 0.91 15 Total: -1.00 -81.31 252.82 0.54 -80.77 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -2.01 Total: 31.92 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 3.77 Total: 26.58 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -3.12 Total: -116.91 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: -0.13 Total: -64.19 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -81.31 0.54 -80.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633306120.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.037 kcal (2) G-P(sol) polarization free energy of solvation -81.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds