Wall clock time and date at job start Sun Mar 29 2020 21:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41175 * 126.69884 * 2 1 4 4 C 1.36985 * 103.84377 * 180.16843 * 3 2 1 5 5 C 1.47290 * 126.96233 * 179.87251 * 4 3 2 6 6 O 1.21646 * 119.99718 * 354.09243 * 5 4 3 7 7 N 1.34777 * 120.00385 * 174.09477 * 5 4 3 8 8 C 1.36687 * 120.00096 * 175.23706 * 7 5 4 9 9 H 1.08000 * 119.99467 * 224.29712 * 8 7 5 10 10 C 1.39156 * 119.99908 * 44.29541 * 8 7 5 11 11 N 1.31293 * 120.00202 * 19.41377 * 10 8 7 12 12 Si 1.86802 * 119.99718 * 199.41696 * 10 8 7 13 13 H 1.48497 * 109.47328 * 269.99679 * 12 10 8 14 14 H 1.48500 * 109.46999 * 30.00307 * 12 10 8 15 15 H 1.48504 * 109.46839 * 149.99875 * 12 10 8 16 16 C 1.46495 * 119.99691 * 355.22857 * 7 5 4 17 17 C 1.53003 * 117.49686 * 185.15002 * 16 7 5 18 18 C 1.53008 * 117.49542 * 116.49682 * 16 7 5 19 19 O 1.34678 * 106.08155 * 359.61255 * 4 3 2 20 20 N 1.20885 * 111.45117 * 0.26626 * 19 4 3 21 21 H 1.08995 * 109.47081 * 270.29309 * 1 2 3 22 22 H 1.08999 * 109.46763 * 30.28851 * 1 2 3 23 23 H 1.08998 * 109.47557 * 150.28637 * 1 2 3 24 24 H 1.08003 * 128.07761 * 0.04246 * 3 2 1 25 25 H 0.97003 * 119.99611 * 174.95386 * 11 10 8 26 26 H 1.08996 * 115.55776 * 330.82905 * 16 7 5 27 27 H 1.08991 * 117.49852 * 0.02562 * 17 16 7 28 28 H 1.09002 * 117.49520 * 145.02236 * 17 16 7 29 29 H 1.09001 * 117.49503 * 214.98127 * 18 16 7 30 30 H 1.08996 * 117.49575 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3507 1.1319 0.0000 4 6 3.6130 0.5999 -0.0039 5 6 4.8862 1.3404 -0.0082 6 8 4.8847 2.5520 -0.1170 7 7 6.0528 0.6757 0.1083 8 6 7.2371 1.3507 0.0067 9 1 8.0437 0.9401 -0.5826 10 6 7.4033 2.5667 0.6625 11 7 6.6128 2.8879 1.6604 12 14 8.7512 3.7421 0.1231 13 1 9.9958 3.4481 0.8780 14 1 9.0025 3.5734 -1.3308 15 1 8.3268 5.1393 0.3932 16 6 6.0516 -0.7702 0.3440 17 6 7.4019 -1.4474 0.5873 18 6 6.6650 -1.6626 -0.7370 19 8 3.4541 -0.7375 0.0029 20 7 2.2847 -1.0438 0.0048 21 1 -0.3633 0.0053 1.0276 22 1 -0.3633 0.8874 -0.5183 23 1 -0.3634 -0.8925 -0.5094 24 1 2.0671 2.1741 0.0006 25 1 6.7740 3.7008 2.1645 26 1 5.1894 -1.1574 0.8867 27 1 8.2909 -0.8171 0.5724 28 1 7.4278 -2.2803 1.2899 29 1 6.2063 -2.6370 -0.9050 30 1 7.0689 -1.1739 -1.6236 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335316632.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:57 Heat of formation + Delta-G solvation = 49.979697 kcal Electronic energy + Delta-G solvation = -16894.759810 eV Core-core repulsion = 14080.495696 eV Total energy + Delta-G solvation = -2814.264113 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.81162 -40.44035 -37.95339 -35.75107 -34.94861 -33.33358 -32.42218 -29.51700 -27.55522 -24.67317 -23.74159 -23.10145 -22.47190 -21.23542 -19.24358 -18.65285 -17.93337 -17.32484 -16.72486 -16.13675 -15.60834 -15.35240 -14.84736 -14.61366 -14.15665 -14.03975 -13.86369 -13.55583 -13.04324 -12.95072 -12.74121 -12.29045 -12.24397 -12.12583 -11.74725 -11.31990 -10.98883 -10.88737 -10.56232 -10.36045 -9.15793 -8.30326 -6.09869 -0.00584 1.15068 1.39102 1.47104 1.54942 1.88588 2.27002 2.46440 2.87581 3.04473 3.22010 3.30820 3.61566 4.00397 4.09085 4.23742 4.27442 4.39767 4.49766 4.72913 4.83575 4.87194 4.87763 5.01141 5.23143 5.26532 5.40928 5.45289 6.07799 6.80766 6.89132 7.17753 7.43508 8.04944 8.77063 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.029551 B = 0.009103 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.295473 B = 3075.134060 C = 3828.160701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.024 3.976 3 C -0.194 4.194 4 C -0.056 4.056 5 C 0.522 3.478 6 O -0.558 6.558 7 N -0.408 5.408 8 C -0.362 4.362 9 H 0.096 0.904 10 C 0.022 3.978 11 N -0.857 5.857 12 Si 0.981 3.019 13 H -0.259 1.259 14 H -0.264 1.264 15 H -0.291 1.291 16 C 0.028 3.972 17 C -0.158 4.158 18 C -0.173 4.173 19 O 0.095 5.905 20 N -0.384 5.384 21 H 0.096 0.904 22 H 0.102 0.898 23 H 0.088 0.912 24 H 0.182 0.818 25 H 0.267 0.733 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -7.126 -2.264 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.135 4.135 3 C -0.217 4.217 4 C -0.122 4.122 5 C 0.309 3.691 6 O -0.439 6.439 7 N -0.125 5.125 8 C -0.489 4.489 9 H 0.113 0.887 10 C -0.186 4.186 11 N -0.491 5.491 12 Si 0.804 3.196 13 H -0.184 1.184 14 H -0.188 1.188 15 H -0.217 1.217 16 C -0.076 4.076 17 C -0.196 4.196 18 C -0.211 4.211 19 O 0.032 5.968 20 N -0.094 5.094 21 H 0.115 0.885 22 H 0.121 0.879 23 H 0.107 0.893 24 H 0.199 0.801 25 H 0.076 0.924 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.236 -7.666 -2.207 10.126 hybrid contribution 0.579 1.663 0.098 1.764 sum -5.657 -6.003 -2.109 8.514 Atomic orbital electron populations 1.20376 0.82149 1.05303 1.04864 1.24183 1.00869 0.87274 1.01169 1.22969 0.89948 1.02222 1.06586 1.24823 0.98261 0.83659 1.05438 1.16811 0.81609 0.86260 0.84390 1.90648 1.85249 1.13542 1.54467 1.42820 1.04522 1.05430 1.59733 1.19321 0.92963 1.04525 1.32090 0.88673 1.26262 0.99137 0.99775 0.93441 1.69916 1.37956 1.24475 1.16754 0.85157 0.77948 0.77153 0.79341 1.18416 1.18816 1.21658 1.22161 0.99135 0.81422 1.04902 1.23201 0.94882 1.01943 0.99524 1.23310 1.03843 1.00963 0.93006 1.85066 1.21298 1.22243 1.68208 1.73605 0.89815 1.25426 1.20547 0.88524 0.87928 0.89320 0.80072 0.92400 0.86696 0.88858 0.86345 0.86201 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.47 71.24 0.75 -0.64 16 2 C 0.02 0.76 7.31 43.53 0.32 1.08 16 3 C -0.19 -7.41 10.92 22.70 0.25 -7.17 16 4 C -0.06 -2.50 6.90 24.36 0.17 -2.33 16 5 C 0.52 28.22 7.06 86.62 0.61 28.83 16 6 O -0.56 -34.07 14.46 -4.18 -0.06 -34.13 16 7 N -0.41 -21.07 2.83 -617.01 -1.74 -22.81 16 8 C -0.36 -19.56 7.87 84.16 0.66 -18.89 16 9 H 0.10 4.83 7.35 -2.91 -0.02 4.81 16 10 C 0.02 1.24 4.34 84.99 0.37 1.61 16 11 N -0.86 -51.11 11.66 21.70 0.25 -50.85 16 12 Si 0.98 43.86 29.60 68.60 2.03 45.89 16 13 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 15 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 16 C 0.03 1.18 5.31 45.00 0.24 1.42 16 17 C -0.16 -5.50 9.80 30.62 0.30 -5.20 16 18 C -0.17 -5.79 10.33 30.62 0.32 -5.47 16 19 O 0.10 3.85 8.10 65.46 0.53 4.38 16 20 N -0.38 -14.02 12.04 -48.77 -0.59 -14.61 16 21 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.18 6.43 8.06 -2.91 -0.02 6.40 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.12 4.68 5.85 -2.39 -0.01 4.67 16 27 H 0.09 3.56 6.78 -2.39 -0.02 3.54 16 28 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -69.73 265.53 5.56 -64.17 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.16 Total: 14.74 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 3.98 Total: -6.77 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -2.08 Total: -88.27 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: 0.47 Total: -29.76 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.73 5.56 -64.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335316632.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.149 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds