Wall clock time and date at job start Sun Mar 29 2020 22:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35460 * 125.55963 * 2 1 4 4 C 1.39834 * 107.85922 * 179.97438 * 3 2 1 5 5 C 1.37867 * 107.09202 * 359.97438 * 4 3 2 6 6 C 1.46678 * 126.23552 * 180.02562 * 5 4 3 7 7 O 1.21695 * 120.00042 * 167.48248 * 6 5 4 8 8 N 1.34770 * 120.00114 * 347.48068 * 6 5 4 9 9 C 1.46504 * 119.99838 * 0.43233 * 8 6 5 10 10 C 1.46496 * 120.00253 * 180.43584 * 8 6 5 11 11 C 1.50696 * 109.47437 * 89.99601 * 10 8 6 12 12 H 1.08002 * 119.99770 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00439 * 179.97438 * 11 10 8 14 14 N 1.31519 * 119.99607 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00305 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46879 * 90.00539 * 15 13 11 17 17 H 1.48500 * 109.47144 * 210.00460 * 15 13 11 18 18 H 1.48502 * 109.47220 * 330.00312 * 15 13 11 19 19 N 1.35529 * 125.56921 * 179.69543 * 2 1 3 20 20 C 1.46504 * 125.67320 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.47589 * 90.02685 * 1 2 3 22 22 H 1.08996 * 109.47110 * 330.02175 * 1 2 3 23 23 H 1.09002 * 109.46697 * 210.02250 * 1 2 3 24 24 H 1.07992 * 126.06898 * 359.92960 * 3 2 1 25 25 H 1.08010 * 126.45327 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47167 * 83.51379 * 9 8 6 27 27 H 1.09002 * 109.47189 * 203.50778 * 9 8 6 28 28 H 1.09000 * 109.47097 * 323.51419 * 9 8 6 29 29 H 1.09005 * 109.47397 * 210.00318 * 10 8 6 30 30 H 1.09002 * 109.47106 * 329.99994 * 10 8 6 31 31 H 0.97004 * 120.00047 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.47269 * 85.67274 * 20 19 2 33 33 H 1.08999 * 109.46646 * 205.67115 * 20 19 2 34 34 H 1.09003 * 109.47051 * 325.66725 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1020 0.0000 4 6 3.6269 0.6768 0.0006 5 6 3.6122 -0.7018 0.0015 6 6 4.7861 -1.5813 0.0029 7 8 4.6559 -2.7694 0.2321 8 7 6.0087 -1.0737 -0.2496 9 6 6.1667 0.3582 -0.5161 10 6 7.1799 -1.9538 -0.2576 11 6 7.3934 -2.4933 -1.6484 12 1 6.7239 -2.2087 -2.4467 13 6 8.4440 -3.3493 -1.9021 14 7 9.2595 -3.6955 -0.9302 15 14 8.7090 -4.0175 -3.6263 16 1 9.5995 -3.0997 -4.3813 17 1 9.3367 -5.3609 -3.5455 18 1 7.4017 -4.1230 -4.3227 19 7 2.2953 -1.1024 0.0059 20 6 1.8242 -2.4896 0.0127 21 1 -0.3634 -0.0005 -1.0276 22 1 -0.3633 0.8901 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 1.9544 2.1269 -0.0011 25 1 4.5024 1.3094 0.0011 26 1 6.2266 0.8991 0.4283 27 1 7.0801 0.5228 -1.0876 28 1 5.3108 0.7180 -1.0873 29 1 8.0599 -1.3904 0.0527 30 1 7.0168 -2.7819 0.4322 31 1 9.9985 -4.2981 -1.1085 32 1 1.6343 -2.8139 -1.0105 33 1 2.5843 -3.1291 0.4614 34 1 0.9036 -2.5578 0.5923 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067509536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:22 Heat of formation + Delta-G solvation = 28.466197 kcal Electronic energy + Delta-G solvation = -16761.438840 eV Core-core repulsion = 14082.074925 eV Total energy + Delta-G solvation = -2679.363914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21234 -38.35636 -35.04155 -32.94589 -32.28814 -31.51772 -28.28611 -26.77284 -25.98838 -25.55904 -22.85923 -20.88624 -19.52951 -18.66200 -16.51962 -16.36848 -15.58675 -15.36854 -14.94528 -14.24032 -14.11571 -13.58254 -13.27554 -13.13813 -12.73629 -12.61059 -12.38675 -12.16685 -12.02484 -11.72594 -11.66828 -11.29526 -10.94936 -10.75087 -10.44292 -10.12719 -9.63333 -9.00582 -8.47298 -8.42744 -7.82422 -7.57660 -6.03749 -4.08506 1.92208 2.94187 2.99102 3.30808 3.37045 3.42027 3.99113 4.14399 4.46067 4.88957 5.00317 5.11661 5.22042 5.31583 5.36590 5.51086 5.63665 5.72086 5.73740 5.78634 5.93923 5.97547 6.26830 6.31763 6.41697 6.96815 7.16642 7.29040 7.42883 7.48593 7.55934 7.92874 8.23294 8.40676 8.89840 9.08247 9.56398 11.04255 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.037407 B = 0.006219 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.335877 B = 4501.523924 C = 4746.816953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.023 3.977 3 C -0.210 4.210 4 C -0.169 4.169 5 C -0.031 4.031 6 C 0.574 3.426 7 O -0.553 6.553 8 N -0.584 5.584 9 C 0.065 3.935 10 C 0.246 3.754 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.409 5.409 20 C 0.060 3.940 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.137 0.863 25 H 0.163 0.837 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.291 9.249 1.736 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.234 4.234 4 C -0.194 4.194 5 C -0.145 4.145 6 C 0.361 3.639 7 O -0.434 6.434 8 N -0.315 5.315 9 C -0.079 4.079 10 C 0.128 3.872 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.083 5.083 20 C -0.081 4.081 21 H 0.089 0.911 22 H 0.097 0.903 23 H 0.081 0.919 24 H 0.154 0.846 25 H 0.180 0.820 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.251 8.114 1.898 16.509 hybrid contribution 0.247 -0.356 -1.012 1.101 sum -14.004 7.758 0.886 16.034 Atomic orbital electron populations 1.20315 0.88303 1.02954 1.02452 1.20466 0.93484 0.86170 1.09196 1.20595 0.92813 0.97295 1.12739 1.22159 0.98128 0.92660 1.06445 1.20449 0.84441 0.93970 1.15669 1.16945 0.82234 0.86383 0.78297 1.90706 1.85327 1.15963 1.51391 1.47829 1.07684 1.08906 1.67050 1.22355 1.03364 0.82034 1.00110 1.19357 0.80559 0.89346 0.97978 1.21436 1.12143 1.28108 0.94797 0.92430 1.24931 0.95742 0.95999 0.97408 1.69938 1.16616 1.35153 1.31693 0.86484 0.78271 0.78328 0.84264 1.20574 1.21074 1.19955 1.43743 1.04825 1.06374 1.53325 1.22304 1.02040 0.80398 1.03368 0.91141 0.90255 0.91941 0.84556 0.82018 0.93250 0.90782 0.90295 0.94650 0.93661 0.92703 0.91029 0.86929 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.08 36.00 0.36 -0.41 16 2 C 0.02 0.31 6.87 -81.95 -0.56 -0.25 16 3 C -0.21 -2.90 10.71 -39.98 -0.43 -3.33 16 4 C -0.17 -2.66 8.69 -39.12 -0.34 -3.00 16 5 C -0.03 -0.59 6.71 -81.98 -0.55 -1.14 16 6 C 0.57 13.09 7.62 -12.86 -0.10 12.99 16 7 O -0.55 -14.35 14.19 5.19 0.07 -14.28 16 8 N -0.58 -13.20 2.86 -184.51 -0.53 -13.72 16 9 C 0.06 1.11 8.71 59.85 0.52 1.63 16 10 C 0.25 6.61 5.13 -5.20 -0.03 6.59 16 11 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 12 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 N -0.41 -6.72 3.16 -115.61 -0.37 -7.09 16 20 C 0.06 0.86 10.56 59.85 0.63 1.49 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.52 7.08 -51.93 -0.37 0.15 16 24 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 25 H 0.16 2.21 4.52 -52.48 -0.24 1.97 16 26 H 0.05 0.72 7.52 -51.93 -0.39 0.33 16 27 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16 28 H 0.08 1.22 5.01 -51.93 -0.26 0.96 16 29 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.05 1.36 7.41 -51.93 -0.38 0.97 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 1.92 5.93 -51.93 -0.31 1.61 16 34 H 0.08 0.82 7.11 -51.93 -0.37 0.45 16 LS Contribution 283.57 15.07 4.27 4.27 Total: -1.00 -33.99 283.57 -6.13 -40.12 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.39 Total: -1.03 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.91 Total: 0.72 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.16 Total: -46.87 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.07 Total: -14.28 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.99 -6.13 -40.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.587 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds