Wall clock time and date at job start Sun Mar 29 2020 21:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00069 * 2 1 4 4 C 1.52993 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47508 * 174.99849 * 4 3 2 6 6 C 1.53004 * 109.47219 * 54.99772 * 4 3 2 7 7 O 1.42907 * 109.47374 * 295.00148 * 4 3 2 8 8 C 1.35673 * 116.99969 * 203.24201 * 7 4 3 9 9 C 1.39322 * 119.81964 * 355.51589 * 8 7 4 10 10 C 1.36432 * 120.18420 * 180.25749 * 9 8 7 11 11 C 1.40835 * 119.81327 * 359.47423 * 10 9 8 12 12 C 1.41212 * 120.17899 * 180.29935 * 11 10 9 13 13 H 1.08000 * 120.00043 * 331.10063 * 12 11 10 14 14 C 1.39894 * 119.99968 * 151.09639 * 12 11 10 15 15 N 1.30887 * 119.99808 * 348.98415 * 14 12 11 16 16 Si 1.86798 * 120.00150 * 168.98039 * 14 12 11 17 17 H 1.48498 * 109.47098 * 60.00125 * 16 14 12 18 18 H 1.48496 * 109.47496 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46984 * 300.00526 * 16 14 12 20 20 C 1.40838 * 119.64083 * 0.27355 * 11 10 9 21 21 C 1.36433 * 119.81021 * 0.02562 * 20 11 10 22 22 H 1.09002 * 109.47333 * 300.00336 * 1 2 3 23 23 H 1.09002 * 109.47408 * 60.00245 * 1 2 3 24 24 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46882 * 59.99969 * 3 2 1 26 26 H 1.08999 * 109.46863 * 299.99721 * 3 2 1 27 27 H 1.09001 * 109.47363 * 299.99877 * 6 4 3 28 28 H 1.09000 * 109.46838 * 60.00248 * 6 4 3 29 29 H 1.08995 * 109.47508 * 179.97438 * 6 4 3 30 30 H 1.08003 * 119.90320 * 0.03020 * 9 8 7 31 31 H 1.07998 * 120.09266 * 179.74895 * 10 9 8 32 32 H 0.97006 * 119.99355 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.09202 * 180.02562 * 20 11 10 34 34 H 1.08001 * 119.90725 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1764 -0.0889 6 6 3.9789 0.3193 -1.1806 7 8 3.9648 0.5796 1.2220 8 6 5.2404 0.8231 1.6148 9 6 6.0919 1.5542 0.7893 10 6 7.3776 1.7990 1.1745 11 6 7.8400 1.3197 2.4155 12 6 9.1674 1.5739 2.8247 13 1 9.9462 1.6959 2.0864 14 6 9.4737 1.6679 4.1865 15 7 8.5110 1.7367 5.0705 16 14 11.2566 1.6951 4.7431 17 1 11.9460 2.8634 4.1389 18 1 11.3116 1.7985 6.2234 19 1 11.9297 0.4445 4.3094 20 6 6.9712 0.5860 3.2463 21 6 5.6902 0.3447 2.8435 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.5359 -0.6726 -1.0911 28 1 3.6515 0.7808 -2.1122 29 1 5.0655 0.2336 -1.1805 30 1 5.7342 1.9252 -0.1599 31 1 8.0376 2.3624 0.5317 32 1 8.7234 1.8015 6.0148 33 1 7.3180 0.2153 4.1996 34 1 5.0228 -0.2181 3.4792 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070376108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:28 Heat of formation + Delta-G solvation = -86.416427 kcal Electronic energy + Delta-G solvation = -16311.819621 eV Core-core repulsion = 13595.181271 eV Total energy + Delta-G solvation = -2716.638350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78650 -38.98201 -37.90587 -35.19884 -33.28506 -31.38875 -30.85672 -28.26731 -26.90933 -26.41030 -23.72045 -22.61445 -21.49149 -19.27012 -18.81811 -17.25949 -17.05224 -16.92666 -16.42736 -15.78194 -15.64316 -15.42090 -14.83699 -14.32206 -14.10316 -13.71739 -13.60272 -13.21036 -12.99729 -12.90760 -12.74138 -12.67967 -12.41043 -12.08331 -11.87258 -11.66511 -11.42288 -11.11521 -10.89130 -10.59649 -9.54142 -8.82738 -8.52945 -6.23342 0.97197 1.04469 1.40769 1.52288 1.54565 2.25206 2.61269 2.78441 2.88078 3.70521 3.87373 4.06453 4.20284 4.35795 4.36661 4.41679 4.52426 4.57582 4.65631 4.74565 4.87515 4.93039 4.96477 5.09866 5.24147 5.30605 5.37064 5.62047 5.67940 5.90530 6.08243 6.24808 6.29724 6.60226 6.85065 6.98373 7.13175 8.43729 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.064638 B = 0.004840 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.074821 B = 5783.314914 C = 6058.550849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.070 3.930 4 C 0.075 3.925 5 H 0.086 0.914 6 C -0.166 4.166 7 O -0.329 6.329 8 C 0.010 3.990 9 C -0.169 4.169 10 C -0.201 4.201 11 C 0.052 3.948 12 C -0.502 4.502 13 H 0.075 0.925 14 C 0.030 3.970 15 N -0.842 5.842 16 Si 0.985 3.015 17 H -0.260 1.260 18 H -0.270 1.270 19 H -0.261 1.261 20 C -0.144 4.144 21 C -0.141 4.141 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.285 0.715 33 H 0.110 0.890 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 0.257 -8.403 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.006 4.006 4 C 0.019 3.981 5 H 0.103 0.897 6 C -0.223 4.223 7 O -0.245 6.245 8 C -0.034 4.034 9 C -0.187 4.187 10 C -0.221 4.221 11 C 0.050 3.950 12 C -0.533 4.533 13 H 0.094 0.906 14 C -0.182 4.182 15 N -0.470 5.470 16 Si 0.806 3.194 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.186 1.186 20 C -0.164 4.164 21 C -0.159 4.159 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.294 0.006 -8.065 13.077 hybrid contribution 0.640 0.350 0.463 0.864 sum -9.654 0.356 -7.602 12.293 Atomic orbital electron populations 1.22924 0.79634 1.03683 1.00882 1.87943 1.21302 1.28006 1.95563 1.22681 0.90467 0.85327 1.02132 1.22616 0.94147 0.97372 0.83998 0.89657 1.22186 1.01247 1.01116 0.97772 1.85976 1.26362 1.71071 1.41072 1.18740 0.84580 1.04529 0.95514 1.20739 0.94633 1.03252 1.00091 1.20878 0.95836 1.05975 0.99379 1.17947 0.94252 0.90726 0.92069 1.19685 0.94615 1.45954 0.93004 0.90641 1.26718 1.03721 0.91559 0.96225 1.69873 1.35857 1.37838 1.03428 0.85216 0.76761 0.79895 0.77558 1.18442 1.19450 1.18584 1.20929 0.93325 1.01100 1.01006 1.20030 0.96497 1.04283 0.95136 0.93797 0.92253 0.88897 0.92788 0.88388 0.92222 0.88939 0.93214 0.85056 0.87475 0.90462 0.87226 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -11.13 9.79 -144.34 -1.41 -12.55 16 3 C 0.07 1.73 5.81 71.98 0.42 2.15 16 4 C 0.07 2.30 2.64 30.59 0.08 2.38 16 5 H 0.09 2.48 6.35 -2.39 -0.02 2.46 16 6 C -0.17 -4.62 8.93 71.98 0.64 -3.98 16 7 O -0.33 -13.65 9.76 -85.27 -0.83 -14.48 16 8 C 0.01 0.48 6.61 22.79 0.15 0.63 16 9 C -0.17 -7.50 8.10 22.11 0.18 -7.32 16 10 C -0.20 -9.99 9.74 22.48 0.22 -9.77 16 11 C 0.05 2.89 5.55 -21.28 -0.12 2.77 16 12 C -0.50 -27.71 9.05 23.40 0.21 -27.50 16 13 H 0.08 3.98 7.87 -2.91 -0.02 3.95 16 14 C 0.03 1.56 5.24 85.23 0.45 2.00 16 15 N -0.84 -45.58 10.86 21.82 0.24 -45.34 16 16 Si 0.98 39.30 29.57 68.60 2.03 41.33 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 20 C -0.14 -7.95 8.60 22.48 0.19 -7.75 16 21 C -0.14 -7.13 9.92 22.11 0.22 -6.91 16 22 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.79 7.56 -2.39 -0.02 1.78 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.53 6.77 -2.39 -0.02 1.51 16 30 H 0.13 4.83 5.36 -2.91 -0.02 4.82 16 31 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 32 H 0.28 14.05 8.30 -92.70 -0.77 13.28 16 33 H 0.11 6.29 6.23 -2.91 -0.02 6.28 16 34 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -64.19 285.91 5.00 -59.19 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 1.08 Total: 23.46 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 3.89 Total: -51.61 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.24 Total: -45.34 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -2.25 Total: -27.03 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -64.19 5.00 -59.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070376108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.225 kcal (2) G-P(sol) polarization free energy of solvation -64.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds