Wall clock time and date at job start Sun Mar 29 2020 21:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46389 * 109.46889 * 180.02562 * 9 7 2 11 11 N 1.39862 * 124.23208 * 270.02121 * 10 9 7 12 12 C 1.22663 * 112.79462 * 179.14281 * 11 10 9 13 13 C 1.47703 * 136.29280 * 173.87684 * 12 11 10 14 14 C 1.51686 * 120.48866 * 75.21693 * 13 12 11 15 15 C 1.60859 * 100.57769 * 47.67181 * 14 13 12 16 16 C 1.50580 * 108.98513 * 37.36930 * 15 14 13 17 17 C 1.51947 * 109.48361 * 259.03107 * 16 15 14 18 18 C 1.52214 * 114.90821 * 93.38144 * 17 16 15 19 19 H 1.09254 * 116.65945 * 64.52323 * 18 17 16 20 20 C 1.34941 * 124.58720 * 90.35715 * 10 9 7 21 21 O 1.21162 * 127.33129 * 1.78274 * 20 10 9 22 22 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 24 24 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 25 25 H 1.08795 * 108.36351 * 202.89126 * 13 12 11 26 26 H 1.10544 * 105.48604 * 314.61880 * 13 12 11 27 27 H 1.09699 * 111.76804 * 289.19055 * 14 13 12 28 28 H 1.09679 * 111.80414 * 166.16458 * 14 13 12 29 29 H 1.09416 * 110.03514 * 276.96606 * 15 14 13 30 30 H 1.09502 * 109.97330 * 157.44245 * 15 14 13 31 31 H 1.09618 * 108.43208 * 141.77390 * 16 15 14 32 32 H 1.07698 * 111.79888 * 22.00489 * 16 15 14 33 33 H 1.09004 * 107.94193 * 331.29475 * 17 16 15 34 34 H 1.09165 * 107.60504 * 214.97466 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2023 -3.6118 0.0018 11 7 2.7148 -4.2100 -1.1539 12 6 3.5087 -5.1127 -0.9097 13 6 4.2452 -6.1272 -1.6907 14 6 5.4524 -5.7327 -2.5201 15 6 6.2662 -4.8452 -1.4535 16 6 6.1216 -5.4649 -0.0888 17 6 5.0784 -4.6992 0.7075 18 6 3.6667 -5.2623 0.6229 19 1 3.5104 -6.2586 1.0431 20 6 2.6940 -4.1980 1.1133 21 8 2.4207 -3.9361 2.2643 22 1 -0.4850 -0.8401 0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8896 25 1 4.5051 -6.9488 -1.0266 26 1 3.5048 -6.5551 -2.3912 27 1 5.1664 -5.1433 -3.4000 28 1 6.0304 -6.6082 -2.8402 29 1 5.8746 -3.8237 -1.4394 30 1 7.3256 -4.8084 -1.7284 31 1 7.0784 -5.3706 0.4378 32 1 5.8628 -6.5086 -0.1488 33 1 5.0748 -3.6686 0.3525 34 1 5.3973 -4.6951 1.7515 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107892441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:31 Heat of formation + Delta-G solvation = -0.272329 kcal Electronic energy + Delta-G solvation = -17175.226193 eV Core-core repulsion = 14494.616083 eV Total energy + Delta-G solvation = -2680.610110 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.98926 -39.23066 -37.88755 -35.93487 -33.50968 -33.30632 -30.24803 -29.06191 -26.37406 -24.72813 -24.49651 -22.10204 -21.46122 -19.78368 -19.40476 -17.72278 -17.37144 -16.59626 -16.39495 -15.79473 -15.59300 -15.27972 -15.08636 -14.69374 -13.96931 -13.91709 -13.72887 -13.62764 -13.47065 -13.15910 -12.71750 -12.61868 -12.25696 -12.04882 -11.65774 -11.64969 -11.39351 -11.18317 -11.01465 -10.76354 -10.41270 -9.73156 -8.87441 -6.63911 0.78117 1.35772 1.42081 1.52300 1.67203 1.70146 2.42490 2.58895 2.94900 3.04832 3.57219 3.75347 3.91260 4.00019 4.13385 4.30883 4.32770 4.47268 4.51745 4.62194 4.76311 4.86587 4.93371 5.01374 5.12176 5.16558 5.20833 5.27172 5.40580 5.55508 5.57928 5.59970 5.90673 6.25789 6.70785 6.92927 7.15133 8.48671 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.007514 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.336009 B = 3725.693916 C = 3973.525605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.127 2.873 4 H -0.279 1.279 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.626 4.626 8 H 0.038 0.962 9 C 0.268 3.732 10 N -0.463 5.463 11 N -0.264 5.264 12 C 0.128 3.872 13 C -0.062 4.062 14 C -0.096 4.096 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.100 4.100 18 C -0.138 4.138 19 H 0.190 0.810 20 C 0.470 3.530 21 O -0.560 6.560 22 H 0.257 0.743 23 H 0.011 0.989 24 H 0.025 0.975 25 H 0.133 0.867 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.023 0.977 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.024 0.976 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.996 -16.222 -5.253 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.223 4.223 3 Si 0.947 3.053 4 H -0.205 1.205 5 H -0.189 1.189 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.056 0.944 9 C 0.148 3.852 10 N -0.279 5.279 11 N -0.065 5.065 12 C -0.068 4.068 13 C -0.101 4.101 14 C -0.134 4.134 15 C -0.173 4.173 16 C -0.142 4.142 17 C -0.139 4.139 18 C -0.162 4.162 19 H 0.207 0.793 20 C 0.259 3.741 21 O -0.438 6.438 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.043 0.957 25 H 0.151 0.849 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.043 0.957 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.014 -13.760 -5.288 20.340 hybrid contribution -0.422 -1.229 1.042 1.666 sum 13.592 -14.990 -4.246 20.675 Atomic orbital electron populations 1.70869 1.07501 1.29936 1.47437 1.27503 0.96536 1.06462 0.91840 0.82827 0.73588 0.70517 0.78412 1.20465 1.18903 1.19687 1.22446 0.94160 0.92844 1.56964 0.94378 1.18913 0.87335 0.83185 0.95777 1.50216 1.42969 1.32675 1.02039 1.72631 1.11138 1.10592 1.12158 1.24421 0.93022 0.94101 0.95263 1.19714 0.98020 0.92503 0.99879 1.22910 0.93902 1.01306 0.95275 1.22926 1.01317 0.97708 0.95310 1.20970 0.97125 1.01486 0.94599 1.21250 0.91207 0.98707 1.02726 1.23388 0.95880 1.00684 0.96258 0.79311 1.22330 0.82414 0.84525 0.84868 1.90602 1.64256 1.69400 1.19543 0.93346 0.97147 0.95712 0.84946 0.89764 0.91919 0.85402 0.95812 0.90126 0.90207 0.86534 0.95687 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.79 13.65 21.45 0.29 -58.50 16 2 C -0.02 -1.49 5.46 84.65 0.46 -1.03 16 3 Si 1.13 53.28 29.90 68.60 2.05 55.33 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.63 -39.36 9.39 25.60 0.24 -39.12 16 8 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.27 15.91 5.31 85.66 0.45 16.37 16 10 N -0.46 -23.52 3.53 -465.05 -1.64 -25.16 16 11 N -0.26 -11.10 11.84 -43.47 -0.51 -11.61 16 12 C 0.13 3.80 5.58 47.70 0.27 4.07 16 13 C -0.06 -0.99 4.34 28.50 0.12 -0.86 16 14 C -0.10 -1.24 7.20 33.07 0.24 -1.00 16 15 C -0.13 -2.36 5.79 32.71 0.19 -2.17 16 16 C -0.10 -1.64 5.19 29.46 0.15 -1.49 16 17 C -0.10 -2.70 4.43 29.99 0.13 -2.57 16 18 C -0.14 -4.14 4.22 -10.67 -0.05 -4.18 16 19 H 0.19 3.89 8.16 -2.25 -0.02 3.87 16 20 C 0.47 22.09 7.49 88.15 0.66 22.75 16 21 O -0.56 -30.69 17.78 -2.67 -0.05 -30.74 16 22 H 0.26 16.58 7.22 -92.71 -0.67 15.91 16 23 H 0.01 0.68 7.88 -2.39 -0.02 0.66 16 24 H 0.02 1.50 8.01 -2.39 -0.02 1.48 16 25 H 0.13 1.06 5.96 -2.50 -0.01 1.04 16 26 H 0.08 1.20 8.20 -1.56 -0.01 1.19 16 27 H 0.06 1.00 8.20 -2.01 -0.02 0.98 16 28 H 0.13 0.66 8.20 -2.03 -0.02 0.64 16 29 H 0.02 0.62 7.03 -2.17 -0.02 0.61 16 30 H 0.08 1.09 8.18 -2.12 -0.02 1.07 16 31 H 0.08 1.05 8.19 -2.06 -0.02 1.03 16 32 H 0.12 1.01 5.73 -3.07 -0.02 1.00 16 33 H 0.02 0.89 6.81 -2.38 -0.02 0.87 16 34 H 0.07 1.80 8.15 -2.30 -0.02 1.78 16 Total: -1.00 -83.95 276.17 4.22 -79.72 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: 1.21 Total: 0.19 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 2.88 Total: -9.24 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -1.86 Total: -95.27 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 53.28 SS G_CDS: 2.05 Total: 55.33 kcal Total: -83.95 4.22 -79.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107892441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.451 kcal (2) G-P(sol) polarization free energy of solvation -83.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds