Wall clock time and date at job start Sun Mar 29 2020 21:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99536 * 2 1 4 4 H 1.48506 * 109.47181 * 239.99776 * 3 2 1 5 5 H 1.48501 * 109.47607 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47477 * 120.00094 * 3 2 1 7 7 C 1.37878 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99860 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46697 * 180.02562 * 9 7 2 11 11 N 1.39151 * 124.43176 * 270.23721 * 10 9 7 12 12 C 1.27570 * 113.16094 * 180.19198 * 11 10 9 13 13 C 1.50697 * 126.41883 * 179.88826 * 12 11 10 14 14 C 1.54961 * 110.92464 * 251.22442 * 13 12 11 15 15 C 1.54270 * 104.16191 * 156.29299 * 14 13 12 16 16 C 1.53869 * 106.63967 * 336.44607 * 15 14 13 17 17 C 1.54268 * 106.60115 * 359.97438 * 16 15 14 18 18 C 1.51440 * 107.16889 * 359.62168 * 12 11 10 19 19 C 1.34950 * 124.44252 * 90.00486 * 10 9 7 20 20 O 1.21294 * 127.50160 * 0.02562 * 19 10 9 21 21 H 0.97002 * 120.00318 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47098 * 59.99910 * 9 7 2 23 23 H 1.09003 * 109.47093 * 299.99555 * 9 7 2 24 24 H 1.09001 * 110.67717 * 127.91492 * 13 12 11 25 25 H 1.08997 * 110.47708 * 37.63897 * 14 13 12 26 26 H 1.09002 * 110.53308 * 274.97289 * 14 13 12 27 27 H 1.09002 * 110.03399 * 217.13605 * 15 14 13 28 28 H 1.08995 * 110.02943 * 95.75505 * 15 14 13 29 29 H 1.08999 * 110.03405 * 119.26051 * 16 15 14 30 30 H 1.09001 * 110.03705 * 240.64196 * 16 15 14 31 31 H 1.08997 * 110.48788 * 142.28685 * 17 16 15 32 32 H 1.09000 * 110.48806 * 264.79985 * 17 16 15 33 33 H 1.08996 * 110.60826 * 118.74402 * 18 12 11 34 34 H 1.09004 * 110.60919 * 241.56612 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0018 11 7 2.7191 -4.2080 -1.1453 12 6 3.5282 -5.1619 -0.8949 13 6 4.2538 -6.0089 -1.9084 14 6 3.6777 -7.4471 -1.9419 15 6 4.0440 -7.9678 -3.3471 16 6 4.2385 -6.7292 -4.2391 17 6 3.9831 -5.4980 -3.3454 18 6 3.6283 -5.2795 0.6116 19 6 2.6984 -4.1922 1.1153 20 8 2.4527 -3.9063 2.2682 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 5.3235 -6.0268 -1.6999 25 1 2.5956 -7.4275 -1.8124 26 1 4.1436 -8.0636 -1.1732 27 1 3.2363 -8.5865 -3.7383 28 1 4.9677 -8.5446 -3.3024 29 1 5.2570 -6.7044 -4.6266 30 1 3.5259 -6.7471 -5.0637 31 1 4.6719 -4.6924 -3.5998 32 1 2.9510 -5.1618 -3.4448 33 1 3.2871 -6.2601 0.9434 34 1 4.6504 -5.0976 0.9436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132849878.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:34 Heat of formation + Delta-G solvation = -1.072880 kcal Electronic energy + Delta-G solvation = -16499.152545 eV Core-core repulsion = 13818.507721 eV Total energy + Delta-G solvation = -2680.644825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55499 -38.10711 -36.45666 -33.63667 -31.85282 -29.19896 -28.98608 -28.27524 -26.54179 -23.06916 -21.66720 -20.50926 -20.02594 -18.38583 -16.74031 -16.22332 -15.83780 -15.27783 -15.21203 -14.46029 -14.15487 -13.84872 -13.40680 -13.27696 -12.66292 -12.31963 -11.69775 -11.62848 -11.50929 -11.29892 -11.19552 -11.12646 -10.84853 -10.72712 -10.71555 -10.49048 -10.38840 -10.04875 -9.62184 -9.03386 -8.50411 -7.78016 -6.12478 -4.18135 2.10880 3.24589 3.30580 3.33515 3.38349 3.40211 4.19220 4.36564 4.40850 4.63937 4.69909 4.86849 5.22110 5.28742 5.35077 5.43333 5.48753 5.52590 5.59841 5.63795 5.81870 5.85948 5.89181 6.06644 6.22158 6.29037 6.41417 6.51367 7.11401 7.24234 7.33261 7.82118 8.07067 8.46959 8.63458 8.87020 9.46597 10.95838 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.006163 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.001864 B = 4542.375188 C = 5064.976556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.267 3.733 10 N -0.442 5.442 11 N -0.209 5.209 12 C 0.055 3.945 13 C -0.010 4.010 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.172 4.172 19 C 0.489 3.511 20 O -0.509 6.509 21 H 0.267 0.733 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 -15.184 -6.753 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.572 4.572 8 H 0.077 0.923 9 C 0.149 3.851 10 N -0.261 5.261 11 N -0.015 5.015 12 C -0.138 4.138 13 C -0.030 4.030 14 C -0.153 4.153 15 C -0.161 4.161 16 C -0.163 4.163 17 C -0.155 4.155 18 C -0.214 4.214 19 C 0.276 3.724 20 O -0.383 6.383 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.115 0.885 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.139 0.861 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.025 -14.165 -6.758 17.627 hybrid contribution 0.752 0.673 0.703 1.230 sum 8.777 -13.492 -6.055 17.197 Atomic orbital electron populations 1.69913 1.06010 1.27494 1.49801 1.24916 0.94955 0.99318 0.94695 0.86457 0.79479 0.82180 0.78756 1.20066 1.20960 1.20084 1.21321 0.93461 0.90289 1.52085 0.92334 1.19446 0.86071 0.80350 0.99196 1.50448 1.42210 1.32831 1.00647 1.74512 1.07551 1.05863 1.13608 1.24838 0.98569 0.96648 0.93794 1.20583 0.98247 0.92455 0.91704 1.22411 1.01455 0.94278 0.97153 1.22115 1.01285 0.97674 0.94988 1.22146 1.01445 0.94469 0.98241 1.22359 1.03537 0.97194 0.92360 1.22061 1.02910 1.01466 0.94994 1.21186 0.81798 0.83475 0.85984 1.90716 1.62399 1.67428 1.17802 0.92386 0.93475 0.93116 0.88526 0.91109 0.91170 0.91815 0.91838 0.91940 0.91786 0.91233 0.90011 0.86100 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -15.66 9.39 -34.44 -0.32 -15.98 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.27 7.33 5.99 -5.19 -0.03 7.30 16 10 N -0.44 -10.47 3.52 -61.06 -0.22 -10.68 16 11 N -0.21 -4.18 11.08 35.53 0.39 -3.79 16 12 C 0.05 0.84 6.60 -78.73 -0.52 0.32 16 13 C -0.01 -0.11 3.41 -89.74 -0.31 -0.41 16 14 C -0.11 -1.04 6.28 -25.03 -0.16 -1.20 16 15 C -0.12 -0.98 6.80 -25.61 -0.17 -1.15 16 16 C -0.13 -1.10 6.80 -25.62 -0.17 -1.28 16 17 C -0.12 -1.33 6.05 -25.07 -0.15 -1.48 16 18 C -0.17 -2.63 6.93 -28.19 -0.20 -2.83 16 19 C 0.49 10.84 8.43 -10.42 -0.09 10.75 16 20 O -0.51 -13.00 17.81 5.54 0.10 -12.91 16 21 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 23 H 0.05 1.49 8.03 -51.93 -0.42 1.08 16 24 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.11 7.57 -51.93 -0.39 0.72 16 33 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 289.89 15.07 4.37 4.37 Total: -1.00 -33.16 289.89 -6.86 -40.02 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -5.00 Total: -3.99 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.22 Total: -4.21 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.91 Total: -40.42 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.10 Total: -12.91 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.16 -6.86 -40.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132849878.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.945 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds