Wall clock time and date at job start Sun Mar 29 2020 22:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99468 * 2 1 4 4 H 1.48498 * 109.46564 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47025 * 300.00296 * 3 2 1 6 6 H 1.48501 * 109.46783 * 60.00345 * 3 2 1 7 7 C 1.37874 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99949 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47322 * 180.02562 * 9 7 2 11 11 N 1.40071 * 126.03536 * 90.02093 * 10 9 7 12 12 C 1.30834 * 108.33779 * 180.02562 * 11 10 9 13 13 C 1.50705 * 125.85430 * 180.02562 * 12 11 10 14 14 C 1.54266 * 110.02990 * 212.88236 * 13 12 11 15 15 C 1.54963 * 104.15999 * 217.13985 * 14 13 12 16 16 C 1.54890 * 102.77701 * 37.88853 * 15 14 13 17 17 C 1.53870 * 110.02767 * 95.66858 * 13 12 11 18 18 C 1.39821 * 108.28488 * 0.02562 * 12 11 10 19 19 C 1.35133 * 126.03509 * 270.02822 * 10 9 7 20 20 O 1.35761 * 126.19300 * 0.02562 * 19 10 9 21 21 H 0.96996 * 120.00268 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47066 * 60.00188 * 9 7 2 23 23 H 1.08999 * 109.46782 * 300.00301 * 9 7 2 24 24 H 1.08997 * 110.01749 * 334.27547 * 13 12 11 25 25 H 1.08998 * 110.48962 * 335.78790 * 14 13 12 26 26 H 1.09000 * 110.48723 * 98.42767 * 14 13 12 27 27 H 1.09000 * 110.71802 * 279.57400 * 15 14 13 28 28 H 1.08996 * 110.76877 * 156.22522 * 15 14 13 29 29 H 1.09003 * 110.48743 * 203.40703 * 16 15 14 30 30 H 1.08993 * 110.59755 * 80.81930 * 16 15 14 31 31 H 1.09001 * 110.03442 * 238.56463 * 17 13 12 32 32 H 1.08997 * 110.03914 * 359.97438 * 17 13 12 33 33 H 1.07998 * 126.07960 * 179.97438 * 18 12 11 34 34 H 0.96691 * 113.99865 * 269.95836 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 7 2.7385 -4.2392 1.1322 12 6 3.5490 -5.1861 0.7344 13 6 4.3363 -6.1079 1.6298 14 6 5.6811 -6.4684 0.9654 15 6 5.9085 -7.9521 1.3506 16 6 4.4811 -8.5484 1.2743 17 6 3.5736 -7.4297 1.8264 18 6 3.5594 -5.1960 -0.6637 19 6 2.7203 -4.2165 -1.0933 20 8 2.4519 -3.9008 -2.3861 21 1 -0.4850 0.8400 0.0004 22 1 0.6243 -2.5567 -0.8903 23 1 0.6249 -2.5570 0.8897 24 1 4.5121 -5.6311 2.5940 25 1 5.6126 -6.3617 -0.1172 26 1 6.4818 -5.8436 1.3613 27 1 6.3066 -8.0311 2.3622 28 1 6.5699 -8.4402 0.6349 29 1 4.4069 -9.4412 1.8953 30 1 4.2167 -8.7796 0.2425 31 1 3.3801 -7.5950 2.8863 32 1 2.6339 -7.4044 1.2748 33 1 4.1318 -5.8635 -1.2907 34 1 1.7029 -4.3836 -2.7615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132850107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:42 Heat of formation + Delta-G solvation = 12.782490 kcal Electronic energy + Delta-G solvation = -16503.893087 eV Core-core repulsion = 13823.849076 eV Total energy + Delta-G solvation = -2680.044011 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.67890 -37.91151 -36.45651 -33.67748 -31.72397 -29.12482 -28.72181 -28.19963 -26.34214 -23.06552 -21.31861 -20.65460 -20.16469 -18.70898 -17.45969 -16.74819 -15.71719 -15.53439 -14.86419 -14.43946 -14.22794 -13.58541 -13.30426 -13.09457 -12.83078 -12.32087 -11.73354 -11.53179 -11.18494 -11.04647 -10.98592 -10.96585 -10.85334 -10.78320 -10.51149 -10.46451 -10.20256 -9.72556 -9.60439 -8.62705 -8.26703 -7.75399 -6.24463 -4.30512 2.56074 3.22513 3.24367 3.29698 3.33902 3.42188 4.32036 4.55258 4.73290 4.79321 4.92075 5.10346 5.29998 5.54279 5.66148 5.70299 5.72434 5.80406 5.89644 6.00081 6.04397 6.14906 6.19088 6.35722 6.39412 6.53323 6.64996 6.91314 7.00037 7.32396 7.44984 7.71707 7.89905 8.26610 8.56184 8.76441 9.35358 10.83907 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.039404 B = 0.005617 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.408854 B = 4983.930402 C = 5135.284868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.255 3.745 10 N -0.334 5.334 11 N -0.279 5.279 12 C 0.064 3.936 13 C -0.007 4.007 14 C -0.117 4.117 15 C -0.124 4.124 16 C -0.123 4.123 17 C -0.112 4.112 18 C -0.302 4.302 19 C 0.259 3.741 20 O -0.464 6.464 21 H 0.267 0.733 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.139 0.861 34 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 -14.496 -0.044 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.082 0.918 9 C 0.137 3.863 10 N -0.123 5.123 11 N -0.106 5.106 12 C -0.099 4.099 13 C -0.027 4.027 14 C -0.155 4.155 15 C -0.162 4.162 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.333 4.333 19 C 0.086 3.914 20 O -0.266 6.266 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.577 -13.244 0.905 14.815 hybrid contribution 0.157 0.474 -0.960 1.082 sum 6.734 -12.770 -0.055 14.436 Atomic orbital electron populations 1.69925 1.06046 1.27542 1.49708 1.24927 0.94993 0.99495 0.94434 0.86273 0.80071 0.82411 0.77780 1.19564 1.20635 1.20603 1.21323 0.93773 0.89614 1.52268 0.91769 1.19675 0.86231 0.80849 0.99502 1.49926 1.33765 1.26552 1.02093 1.77380 1.15190 1.10059 1.07999 1.21771 0.98488 0.96616 0.93060 1.20041 0.92934 0.92810 0.96912 1.22484 0.95914 0.95590 1.01554 1.22504 0.96759 0.95784 1.01130 1.22351 0.95048 0.97589 1.01042 1.22147 0.98840 0.93144 1.00947 1.20739 1.11683 1.06034 0.94836 1.18795 0.97626 0.94046 0.80931 1.84896 1.53734 1.68356 1.19631 0.92345 0.93228 0.92857 0.89993 0.90548 0.91602 0.91659 0.91750 0.92028 0.91655 0.91717 0.91490 0.84279 0.75710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.32 9.39 -34.44 -0.32 -15.64 16 8 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.26 6.75 6.14 -5.19 -0.03 6.72 16 10 N -0.33 -8.01 3.60 -62.67 -0.23 -8.23 16 11 N -0.28 -6.42 12.57 33.66 0.42 -6.00 16 12 C 0.06 1.22 5.93 -82.42 -0.49 0.73 16 13 C -0.01 -0.10 3.43 -90.65 -0.31 -0.41 16 14 C -0.12 -1.43 6.31 -25.03 -0.16 -1.59 16 15 C -0.12 -1.21 6.91 -24.70 -0.17 -1.38 16 16 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 17 C -0.11 -1.39 6.45 -25.61 -0.17 -1.56 16 18 C -0.30 -5.61 9.80 -39.81 -0.39 -6.00 16 19 C 0.26 5.46 7.98 -16.92 -0.14 5.32 16 20 O -0.46 -8.72 13.58 -18.99 -0.26 -8.98 16 21 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 23 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.08 0.97 6.09 -51.93 -0.32 0.65 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 33 H 0.14 2.19 7.06 -52.49 -0.37 1.82 16 34 H 0.39 5.03 9.06 45.56 0.41 5.44 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -31.83 287.77 -6.47 -38.30 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.02 Total: 2.34 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.44 Total: -13.49 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.93 Total: -39.30 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.26 Total: -8.98 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.83 -6.47 -38.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132850107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.080 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds